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Tuning Approximate Boyer-Moore for Gene Sequences

机译:调整基因序列的近似博伊尔摩尔

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摘要

Recently a new variation of approximate Boyer-Moore string matching was presented for the k-mismatch problem. This variation was developed for gene sequences. We further tuned this algorithm gaining speedups in both preprocessing and search times. Our preprocessing has lower time complexity than the previous algorithm and our experiments show that our algorithm is over 30% faster than the previous one. We also present two variations of the algorithm for the k-difference problem.
机译:最近,为k-mismatch问题提出了一个近似博客弦串匹配的新变化。该变异是针对基因序列开发的。我们进一步调整了该算法在预处理和搜索时间中获得了加速。我们的预处理具有比上一个算法的时间复杂性较低,我们的实验表明,我们的算法比上一个速度快30%。我们还为k差异问题呈现了算法的两个变体。

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