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Approximate Swap and Mismatch Edit Distance

机译:近似交换和不匹配编辑距离

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摘要

There is no known algorithm that solves the general case of the Approximate Edit Distance problem, where the edit operations are: insertion, deletion, mismatch, and swap, in time o(nm), where n is the length of the text and m is the length of the pattern. In the effort to study this problem, the edit operations were analyzed independently. Karloff [10] showed an algorithm that approximates the edit distance problem with only the mismatch operation in time O((1/(∈~2))n log~3 m). Amir et. Al. [3] showed that if the only edit operations allowed are swap and mismatch, then the exact edit distance problem can be solved in time O(nm~(1/2) log m). In this paper, we discuss the problem of approximate edit distance with swap and mismatch. We show a randomized O((1/(∈~3))n log~3 m) time algorithm for the problem. The algorithm guarantees an approximation factor of (1 + ∈) with probability of at least 1 -1/n.
机译:没有已知的算法解决了近似编辑距离问题的一般情况,其中编辑操作是:插入,删除,不匹配和交换,在时间o(nm)中,其中n是文本的长度,m是图案的长度。在研究这个问题的努力中,独立分析了编辑操作。 Karloff [10]显示了一种算法,其近似于时间o((1 /(∈〜2))n log〜3 m)的不匹配操作。 amir等。 al。 [3]显示,如果允许唯一的编辑操作是交换和不匹配,则可以在时间O(nm〜(1/2)log m)中解决精确的编辑距离问题。在本文中,我们讨论了与交换和不匹配的近似编辑距离的问题。我们展示了一个随机的O((1 /(∈〜3))n log〜3 m)时间算法。该算法保证了(1 +∈)的近似因子,概率至少为1 -1 / n。

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