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Approximate Swap and Mismatch Edit Distance

机译:近似交换和不匹配编辑距离

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摘要

There is no known algorithm that solves the general case of the Approximate Edit Distance problem, where the edit operations are: insertion, deletion, mismatch, and swap, in time o(nm), where n is the length of the text and m is the length of the pattern. In the effort to study this problem, the edit operations were analyzed independently. Karloff [10] showed an algorithm that approximates the edit distance problem with only the mismatch operation in time O((1/(∈~2))n log~3 m). Amir et. Al. [3] showed that if the only edit operations allowed are swap and mismatch, then the exact edit distance problem can be solved in time O(nm~(1/2) log m). In this paper, we discuss the problem of approximate edit distance with swap and mismatch. We show a randomized O((1/(∈~3))n log~3 m) time algorithm for the problem. The algorithm guarantees an approximation factor of (1 + ∈) with probability of at least 1 -1.
机译:没有一种已知的算法可以解决“近似编辑距离”问题的一般情况,在这种情况下,编辑操作为:插入,删除,不匹配和交换,时间为o(nm),其中n为文本的长度,m为模式的长度。为了研究这个问题,对编辑操作进行了独立分析。 Karloff [10]展示了一种算法,该算法仅在时间O((1 /(ε〜2))n log〜3 m)中通过不匹配操作来近似编辑距离问题。阿米尔(Amir)等。铝文献[3]表明,如果仅允许进行交换和不匹配的编辑操作,则可以在O(nm〜(1/2)log m)的时间内解决精确的编辑距离问题。在本文中,我们讨论具有交换和不匹配的近似编辑距离问题。我们展示了该问题的随机O((1 /(ε〜3))n log〜3 m)时间算法。该算法保证近似因子(1 +∈)的概率至少为1 -1 / n。

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