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Robust Indexing - Optimal Codes for DNA Storage

机译:稳健的索引-DNA存储的最佳代码

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The channel model of encoding data as a set of unordered strings is receiving great attention as it captures the basic features of DNA storage systems. However, the challenge of constructing optimal redundancy codes for this channel remained elusive. In this paper, we solve this open problem and present an order-wise optimal construction of codes that correct multiple substitution errors for this channel model. The key ingredient in the code construction is a technique we call robust indexing: instead of using fixed indices to create order in unordered strings, we use indices that are information dependent and thus eliminate unnecessary redundancy. In addition, our robust indexing technique can be applied to the construction of optimal deletion/insertion codes for this channel.
机译:将数据编码为一组无序字符串的通道模型受到了广泛的关注,因为它捕获了DNA存储系统的基本特征。然而,为该信道构造最佳冗余码的挑战仍然难以捉摸。在本文中,我们解决了这个开放性问题,并提出了一种针对该通道模型纠正多个替换错误的代码的有序优化构造。代码构造中的关键要素是一种称为稳健索引的技术:与其使用固定索引来创建无序字符串中的顺序,我们使用依赖于信息的索引,从而消除了不必要的冗余。此外,我们强大的索引技术可以应用于此通道的最佳删除/插入代码的构造。

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