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eXtasy simplified-towards opening the black box

机译:eXtasy简化了,即将打开黑匣子

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Exome sequencing remarkably simplifies the search for mutations causing rare monogenie disorders. Still, due to a big number of potential candidate variants, computational methods are needed to facilitate this process. Recently, an algorithm based on genomic data fusion has been proposed in this context (eXtasy), which exhibits highly competitive performances among the state of the art methods. Nonetheless, being based on a Random Forest classifier, its core model is characterized by a prohibitive size, slow execution speed and difficulties associated with gaining insights in the decision-making process. Here we propose a simplification of the original eXtasy algorithm that retains superior ranking capability of former without suffering from the both high complexity and low interpretability.
机译:外显子组测序显着简化了对引起罕见单基因突变的突变的搜索。但是,由于存在大量潜在的候选变体,因此需要计算方法来简化此过程。最近,在这种情况下(eXtasy)提出了一种基于基因组数据融合的算法,该算法在最先进的方法中表现出极强的竞争力。然而,基于随机森林分类器,其核心模型的特点是规模过大,执行速度慢以及与在决策过程中获得见识相关的困难。在这里,我们提出了一种简化原始eXtasy算法的方法,该算法保留了前者的出色排序能力,而又不会遭受高复杂性和低解释性的困扰。

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