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A Search-based Neural Model for Biomedical Nested and Overlapping Event Detection

机译:基于搜索的生物医学嵌套和重叠事件检测的神经模型

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摘要

We tackle the nested and overlapping event detection task and propose a novel search-based neural network (SBNN) structured prediction model that treats the task as a search problem on a relation graph of trigger-argument structures. Unlike existing structured prediction tasks such as dependency parsing, the task targets to detect DAG structures, which constitute events, from the relation graph. We define actions to construct events and use all the beams in a beam search to detect all event structures that may be overlapping and nested. The search process constructs events in a bottom-up manner while modelling the global properties for nested and overlapping structures simultaneously using neural networks. We show that the model achieves performance comparable to the state-of-the-art model Turku Event Extraction System (TEES) on the BioNLP Cancer Genetics (CG) Shared Task 2013 without the use of any syntactic and hand-engineered features. Further analyses on the development set show that our model is more computationally efficient while yielding higher F1-score performance.
机译:我们解决了嵌套和重叠的事件检测任务,并提出了一种新颖的基于搜索的神经网络(SBNN)结构的预测模型,该模型将任务视为触发参数结构关系图上的搜索问题。与现有的结构化预测任务(如依赖关系分析)不同,该任务的目标是从关系图中检测构成事件的DAG结构。我们定义构造事件的动作,并在波束搜索中使用所有波束来检测可能重叠和嵌套的所有事件结构。搜索过程以自下而上的方式构造事件,同时使用神经网络同时为嵌套和重叠结构的全局属性建模。我们展示了该模型在不使用任何语法和手工设计功能的情况下,可实现与BioNLP癌症遗传学(CG)共享任务2013上的最新模型Turku事件提取系统(TEES)相当的性能。对开发集的进一步分析表明,我们的模型在提高F1评分性能的同时,计算效率更高。

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