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Modeling and Control of the Protein Synthesis process in Eukaryotic cells

机译:真核细胞中蛋白质合成过程的建模与控制

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Protein synthesis is an essential process of cell cycle and growth in eukaryotic cells. The initiation stage of the translation process is known to be the most crucial in regulation of gene expression. This paper presents a reduced model of the initiation process using the eukaryotic initiation factor (eIF)-2 unit and proposes methods to control it. Linearization of the model is presented as a measure to simplify the analysis and the control applications. The properties of the linear model were investigated and compared to the nonlinear model. It was shown that the linear model is (marginally) stable and a linear controller was introduced to regulate the production level of protein. A nonlinear state feedback control was also applied in order to increase production of protein in a controlled manner. In both linear and nonlinear models, the rate of protein synthesis can be regulated using a specific factor as an intracellular input, and by means of measurement techniques available today. The density of the ribosomes on the mRNA can then be set to a desired level. If this strategy can be implemented de facto, then a genuine control on protein synthesis process can be obtained.
机译:蛋白质合成是细胞周期和真核细胞生长的基本过程。已知翻译过程的起始阶段是基因表达调控中最重要的。本文介绍了使用真核启动因子(EIF)-2单元的起始过程的较小模型,并提出了控制它的方法。模型的线性化被呈现为简化分析和控制应用的度量。研究了线性模型的性质并与非线性模型进行了比较。结果表明,线性模型(边缘地)稳定,引入了线性控制器来调节蛋白质的生产水平。还应用了非线性状态反馈控制,以便以受控方式增加蛋白质的产生。在直线和非线性模型中,可以使用特定因子作为细胞内输入来调节蛋白质合成速率,并通过今天可用的测量技术来调节。然后可以将MRNA上的核糖体的密度设定为所需的水平。如果可以实现该策略,则可以获得对蛋白质合成过程的真正控制。

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