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A Hybrid Approach for Segmentation and Tracking of Myxococcus Xanthus Swarms

机译:混合球菌黄单胞菌群体的分割和跟踪方法

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Segmentation and tracking of moving cells in time-lapse images is an important problem in biomedical image analysis. For Myxococcus xanthus, rod-like cells with highly coordinated motion, their segmentation and tracking are challenging because cells may touch tightly and form dense swarms that are difficult to identify accurately. Common methods fall under two frameworks: detection association and model evolution. Each framework has its own advantages and disadvantages. In this paper, we propose a new hybrid framework combining these two frameworks into one and leveraging their complementary advantages. Also, we propose an active contour model based on the Ribbon Snake and Chan-Vese model, which is seamlessly integrated with our hybrid framework. Our approach outperforms the state-of-the-art cell tracking algorithms on identifying completed cell trajectories, and achieves higher segmentation accuracy than some best known cell segmentation algorithms.
机译:延时图像中运动细胞的分割和跟踪是生物医学图像分析中的重要问题。对于黄色粘球菌,具有高度协调运动的杆状细胞,其分割和跟踪具有挑战性,因为细胞可能紧密接触并形成密集群,难以准确识别。常见方法属于两个框架:检测关联和模型演化。每个框架都有其自身的优点和缺点。在本文中,我们提出了一个新的混合框架,将这两个框架合并为一个框架,并利用了它们的互补优势。此外,我们提出了基于Ribbon Snake和Chan-Vese模型的主动轮廓模型,该模型与我们的混合框架无缝集成。我们的方法在识别完整的细胞轨迹方面优于最新的细胞跟踪算法,并且比某些最知名的细胞分割算法具有更高的分割精度。

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