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Four level provenance support to achieve portable reproducibility of scientific workflows

机译:四个级别出处支持,实现科学工作流的便携式再现性

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In the scientist's community one of the most vital challenges is the issue of reproducibility of workflow execution. In order to reproduce the results of an experiment, on one hand provenance information must be collected and on the other hand the dependencies of the execution need to be eliminated. Concerning the workflow execution environment we have differentiated four levels of provenance: infrastructural, environmental, workflow and data provenance. During the re-execution at all levels the components can change and capturing the data of each levels targets different problems to solve. For example storing the environmental and infrastructural parameters enables the portability of workflows between the different parallel and distributed systems (grid, HPC, cloud). The describers of the workflow model enable tracking the different versions of the workflow and their impacts on the execution. Our goal is to capture the most optimal parameters in number and type as well and reconstruct the way of data production independently from the environment. In this paper we investigate the necessary and satisfactory parameters of workflow reproducibility and give a mathematical formula to determine the rate of reproducibility. These measurements allow the scientist to make a decision about the next steps toward the creation of reproducible workflows.
机译:在科学家的社区中,最重要的挑战之一是工作流程的再现性问题。为了再现实验的结果,在一方面,必须收集一方面的来源信息,另一方面需要消除执行的依赖关系。关于工作流执行环境我们有四个级别的差异:基础设施,环境,工作流程和数据出处。在所有级别的重新执行期间,组件可以更改和捕获每个级别的数据目标以解决不同的问题。例如,存储环境和基础设施参数使不同并行和分布式系统(网格,HPC,云)之间的工作流程的可移植性。工作流程模型的描述位启用跟踪工作流的不同版本及其对执行的影响。我们的目标是捕获数量和类型中最佳参数,并从环境中独立地重建数据生产方式。在本文中,我们研究了工作流程再现性的必要和令人满意的参数,并提供了确定重现率的数学公式。这些测量允许科学家决定对创建可再生工作流程的下一个步骤。

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