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Bridging two biomedical journal databases with XML - a case study

机译:用XML桥接两个生物医学期刊数据库-一个案例研究

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For transferring data between heterogeneous databases, XML is becoming a method of choice. While deployment is generally successful, there are barriers to overcome. A recent example at the National Library of Medicine (NLM) involved transfers between "DCMS" (Data Creation and Maintenance System) and "Mars" (Medical Article Records System). These two document workflow systems, with separate databases, process biomedical journals for incorporation into NLM's "MEDLINE"bibliographic database. DCMS acts as an overall manager, while Mars is one of three decoupled methods for harvesting the abstracts and citation information from articles. A pre-existing flow of article information from the "back-end" of Mars was first recast into XML for delivery to DCMS by an "upload" daemon. Next addressed was the lack of data flow from DCMS to the Mars "front-end", necessitating duplicative data entry by Mars operators. The desired flow was achieved as XML, mediated by a new "CheckIn" module. Bumps hit on the road to successful deployment of these transfer applications are discussed.
机译:为了在异构数据库之间传输数据,XML已成为一种选择方法。尽管部署通常是成功的,但仍有许多障碍需要克服。美国国家医学图书馆(NLM)的最新示例涉及“ DCMS”(数据创建和维护系统)和“ Mars”(医疗记录系统)之间的转移。这两个具有独立数据库的文档工作流程系统处理生物医学期刊,以将其合并到NLM的“ MEDLINE”书目数据库中。 DCMS担任整体经理,而Mars是从文章中获取摘要和引用信息的三种分离方法之一。来自火星“后端”的预先存在的文章信息流首先被重铸为XML,以通过“上载”守护程序传递到DCMS。接下来要解决的是缺少从DCMS到火星“前端”的数据流,这需要火星操作员输入重复的数据。通过新的“ CheckIn”模块作为XML实现了所需的流程。讨论了成功部署这些传输应用程序的过程中遇到的问题。

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