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Generic framework for organ localization in CT and MR images

机译:CT和MR图像中器官定位的通用框架

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Organ localization is an important step in medical applications such as automated image analysis, segmentation, registration, smarter workflow designs, or data mining. In this paper, we present a generic framework for automated localization of anatomical structures and organs in CT and MR image data. In the learning phase, we identify unique signatures for organs of interest from training data. Organ localization is done in three steps: body region identification, organ size estimation, and signature matching for localization. These steps enable our algorithm to be robust across patient demographics, profiles and medical conditions. Our technique does not make a priori assumptions about presence or absence of any organ or supporting structure in supplied data. We propose a cascading scheme consisting of Gabor filtering followed by Speeded-Up Robust Features (SURF) for identification of reliable interest points, and show that our objective function has stronger local minima when compared with SURF, SIFT and GIST-based methods.We find point-based correspondences for an input image with exemplar images for body region identification. We have also introduced a computationally efficient way to build histogram of 3D Uniform Local Gabor Binary Patterns using fuzzy approximations. We have used our algorithm for retrieving head, neck, liver, heart, kidneys, spleen and lungs regions from a database of 60 non-contrast CT and 80 T1-weighted MR images. The performance is assessed quantitatively on all three stages using ground-truth database sanitized by medical experts. The average error in body region estimation was 5.76mm. In organ size estimation, the average error was 8.32% of the organ size. Finally, organs were localized correctly 97.14% of the times, within an error margin of 20mm.
机译:器官定位是医学应用程序中的重要步骤,例如自动图像分析,分割,配准,更智能的工作流程设计或数据挖掘。在本文中,我们提出了一种用于在CT和MR图像数据中自动定位解剖结构和器官的通用框架。在学习阶段,我们从训练数据中识别感兴趣器官的独特特征。器官定位通过三个步骤完成:身体部位识别,器官大小估计和用于定位的签名匹配。这些步骤使我们的算法在患者人口统计资料,概况和医疗状况方面具有稳健性。我们的技术没有对提供的数据中是否存在任何器官或支持结构做出先验假设。我们提出了一种由Gabor滤波和加速鲁棒特征(SURF)组成的级联方案,以识别可靠的兴趣点,并表明与SURF,SIFT和GIST方法相比,我们的目标函数具有更强的局部最小值。输入图像的基于点的对应关系与用于身体区域识别的示例性图像。我们还介绍了一种计算有效的方法,可以使用模糊逼近来构建3D均匀局部Gabor二进制模式的直方图。我们已使用我们的算法从60个非对比CT和80个T1加权MR图像的数据库中检索头部,颈部,肝脏,心脏,肾脏,脾脏和肺部区域。使用由医学专家消毒过的真实数据库对这三个阶段的性能进行定量评估。身体部位估计的平均误差为5.76mm。在器官大小估计中,平均误差为器官大小的8.32%。最终,器官的正确定位率为97.14%,误差范围为20mm。

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