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Cellular automaton model for simulating tissue-specific intestinal electrophysiological activity

机译:模拟组织特异性肠电生理活动的细胞自动机模型

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摘要

Depletion of interstitial cell of Cajal (ICC) networks is known to occur in various gastrointestinal (GI) motility disorders. Although techniques for quantifying the structure of ICC networks are available, the ICC network structure-function relationships are yet to be well elucidated. Existing methods of relating ICC structure to function are computationally expensive, and it is difficult to up-scale them to larger multiscale simulations. A new cellular automaton model for simulating tissue-specific slow wave propagation was developed, and in preliminary studies the automaton model was applied on jejunal ICC network structures from wild-type and 5-HT2B receptor knockout (ICC depleted) mice. Two metrics were also developed to quantify the simulated propagation patterns: 1) ICC and 2) non-ICC activation lag metrics. These metrics measured the average delay in time taken for the slow wave to propagate across the ICC and non-ICC domain throughout the entire network compared to the theoretical fastest propagation, respectively. Slow wave propagation was successfully simulated across the ICC networks with greatly reduced computational time compared to previous methods, and the propagation pattern metrics quantitatively revealed an impaired propagation during ICC depletion. In conclusion, the developed slow wave propagation model and propagation pattern metrics offer a computationally efficient framework for relating ICC structure to function. These tools can now be further applied to define ICC structure-function relationships across various spatial and temporal scales.
机译:Cajal(ICC)网络的间质细胞的耗竭已知发生在各种胃肠(GI)运动性疾病中。尽管可以使用量化ICC网络结构的技术,但尚未很好地阐明ICC网络结构与功能之间的关系。现有的将ICC结构与功能相关联的方法在计算上是昂贵的,并且难以将它们放大到更大的多尺度仿真。开发了一种新的用于模拟组织特异性慢波传播的细胞自动机模型,并且在初步研究中,将自动机模型应用于野生型和5-HT2B受体敲除(ICC耗竭)小鼠的空肠ICC网络结构。还开发了两个指标来量化模拟的传播模式:1)ICC和2)非ICC激活滞后指标。这些指标分别测量了慢波在整个网络中跨ICC和非ICC域传播所需的平均时间延迟,与理论上最快的传播相比。与以前的方法相比,已成功地在ICC网络上成功模拟了慢波传播,并且大大减少了计算时间,并且传播模式指标定量显示了ICC耗尽期间的传播受损。总之,开发的慢波传播模型和传播模式度量为将ICC结构与功能相关提供了一个计算有效的框架。这些工具现在可以进一步应用于定义跨各种时空尺度的ICC结构-功能关系。

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