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Grid Framework for Parallel Investigations of Spiking Neural Microcircuits

机译:尖峰神经微电路并行研究的网格框架

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Simulation of spiking neural networks is computationally expensive and the employment of multicore processors can boost the performance of such simulations. Designing parallelization strategies that work well for different characteristics of the microcircuits entails expensive computations, leading to increased development times. To speed up the design of multicore software for computational neuroscience, we have developed a framework that exploits multicore systems available in grid computing environments. Due to the use of Grid SFEA plugins, common operations such as evaluation of parallelization strategies can be undertaken with very little effort. We evaluated the plugins for the development of a synchronous multicore spiking neural simulator. This uses the spike response model combined with the phenomenological model of spike time dependent synapse plasticity. The parallelization uses OpenMP, the microcircuits have small world topologies and count up to 10^4 neurons and 10^7 synapses with biological details. With this novel framework more complex investigations in computational neuroscience such as analysis of the dynamics of neural microcircuits could be tackled.
机译:尖峰神经网络的仿真在计算上很昂贵,使用多核处理器可以提高这种仿真的性能。设计适合于微电路不同特性的并行化策略需要昂贵的计算,从而导致开发时间增加。为了加快用于计算神经科学的多核软件的设计,我们开发了一个框架,该框架利用了网格计算环境中可用的多核系统。由于使用了Grid SFEA插件,因此可以很轻松地进行诸如评估并行化策略之类的常见操作。我们评估了用于开发同步多核尖峰神经模拟器的插件。这将峰值响应模型与峰值时间相关突触可塑性的现象学模型结合使用。并行化使用OpenMP,这些微电路具有较小的世界拓扑,并且最多包含10 ^ 4个神经元和10 ^ 7个具有生物学细节的突触。有了这个新颖的框架,就可以解决计算神经科学方面更复杂的研究,例如对神经微电路动力学的分析。

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