METHOD OF COMPRESSION AND TRANSMISION FOR FASTQ GENOME DATA

摘要

The method of compressing dielectric data for compressing dielectric data in FASTQ format of the present invention includes the steps of: storing fixed header data in a compression result storage in a first line of first sequence data by a first core, which is one of the M cores; The first core distributes N (N is a natural number of 2 or more) sequence data to each of the remaining M-1 (M is a natural number of 4 or more) cores (hereinafter referred to as'other cores'), and the other cores Compressing each of the N*(M-1) sequence data at a time, performing parallel processing and storing in the compression result storage; Including, the compression performed in each of the other cores, each Removing the fixed header of the first line from the sequence data; Encoding the second line; Storing the identifier of the third line; A process of repetition length encoding of the fourth line; a first-stage compression of repeating a process consisting of the N sequence data and the first-stage compression of the N sequence data, a lossless compression algorithm It characterized in that it performs a second step compression; compressing by.