A waste treatment process utilizes a two-stage digestion process with a thermophilic digester, a heat exchanger, and a mesophilic digester. The pH of the thermophilic digestate is increased by removal of carbon dioxide with an air stripper, or by adding a pH increasing reagent upstream of the heat exchanger. The pH adjustment of the digestate protects the heat exchanger and downstream equipment and processes from struvite formation. A struvite reactor may be located in various locations downstream of the heat exchanger to produce a treated digestate or effluent that contains struvite, which can optionally be recovered for beneficial use.
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