首页> 外文期刊>biomolecules >Prognosis Risk Model Based on Pyroptosis-Related lncRNAs for Gastric Cancer
【24h】

Prognosis Risk Model Based on Pyroptosis-Related lncRNAs for Gastric Cancer

机译:基于焦亡相关lncRNAs的胃癌预后风险模型

获取原文
获取原文并翻译 | 示例
获取外文期刊封面目录资料

摘要

Simple Summary In this study, we aimed to determine the correlation between pyroptosis-related lncRNAs and gastric cancer prognoses. A novel predictive signature including six pyroptosis-related lncRNAs was established for the purposes of gastric cancer and immune status prognoses, which were achieved by using bioinformatics tools. After multiple validations, we confirmed that this signature possessed a good predictive performance. We found that high risk was associated with increased immune cell infiltration, increased immune function scores, and up-regulated expressions of immune checkpoints; in other words, the high-risk gastric cancer patients were more likely to benefit from the combination of immunotherapy and chemotherapy. Then, we performed quantitative reverse transcription polymerase chain reactions in order to verify the risk model. Further, the results indicated that pyroptosis-related genes play a crucial role in tumor progression and prognosis. In summary, the six pyroptosis-related lncRNAs in this study can be used as novel biomarkers for the prognosis and treatment of gastric cancer. Gastric cancer (GC) is a malignant tumor with a low survival rate, high recurrence rate, and poor prognosis. With respect to this, pyroptosis is a type of programmed cell death that can affect the occurrence and development of tumors. Indeed, long non-coding RNAs (lncRNAs) were broadly applied for the purposes of early diagnosis, treatment, and prognostic analysis in regard to cancer. Based on the association of these three purposes, we developed a novel prognosis risk model based on pyroptosis-related lncRNAs (PRlncRNAs) for GC. The PRlncRNAs were obtained via univariate and multivariate Cox regression in order to build the predictive signatures. The Kaplan-Meier and gene set enrichment analysis (GSEA) methods were used to evaluate the overall survival (OS) and functional differences between the high- and low-risk groups. Moreover, the correlation of the signatures with immune cell infiltration was determined through single-sample gene set enrichment analysis (ssGSEA). Finally, we analyzed this correlation with the treatment responses in the GC patients; then, we performed quantitative reverse transcription polymerase chain reactions (qRT-PCRs) in order to verify the risk model. The high-risk group received a worse performance in terms of prognosis and OS when compared to the low-risk group. With respect to this, the area under the receiver operating characteristic curve (ROC) was found to be 0.808. Through conducting the GSEA, it was found that the high-risk groups possessed a significant enrichment in terms of tumor-immunity pathways. Furthermore, the ssGSEA revealed that the predictive features possessed strong associations with immune cell infiltration in regard to GC. In addition, we highlighted that anti-immune checkpoint therapy, combined with conventional chemotherapy drugs, may be more suitable for high-risk patients. The expression levels of LINC01315, AP003392.1, AP000695.2, and HAGLR were significantly different between the GC cell lines and the normal cell lines. As such, the six PRlncRNAs could be regarded as important prognostic biomarkers for the purposes of subsequent diagnoses, treatments, prognostic predictions, and the mechanism research of GC.
机译:简单总结 在这项研究中,我们旨在确定焦亡相关 lncRNA 与胃癌预后之间的相关性。建立了一种新的预测特征,包括六个与细胞焦亡相关的lncRNA,用于胃癌和免疫状态的预测,这是通过使用生物信息学工具实现的。经过多次验证,我们确认该特征具有良好的预测性能。我们发现高风险与免疫细胞浸润增加、免疫功能评分增加和免疫检查点表达上调有关;换言之,高危胃癌患者更有可能从免疫治疗和化疗的结合中获益。然后,我们进行了定量逆转录聚合酶链反应,以验证风险模型。此外,结果表明,焦亡相关基因在肿瘤进展和预后中起着至关重要的作用。综上所述,本研究中的6种与细胞焦亡相关的lncRNAs可作为胃癌预后和治疗的新型生物标志物。胃癌(GC)是一种生存率低、复发率高、预后差的恶性肿瘤。就此而言,细胞焦亡是一种程序性细胞死亡,可以影响肿瘤的发生和发展。事实上,长链非编码RNA(lncRNA)被广泛用于癌症的早期诊断、治疗和预后分析。基于这三个目的的关联,我们开发了一种基于细胞焦亡相关lncRNA(PRlncRNA)的GC预后风险模型。通过单因素和多因素Cox回归获得PRlncRNA,以建立预测特征。采用Kaplan-Meier和基因集富集分析(GSEA)方法评估高危组和低危组的总生存期(OS)和功能差异。此外,通过单样本基因集富集分析(ssGSEA)确定特征与免疫细胞浸润的相关性。最后,我们分析了GC患者治疗反应的相关性;然后,我们进行了定量逆转录聚合酶链反应(qRT-PCRs)以验证风险模型。与低风险组相比,高危组在预后和OS方面的表现较差。就此而言,发现受试者工作特征曲线(ROC)下的面积为0.808。通过开展GSEA调查,发现高危人群在肿瘤免疫通路方面具有显著的富集。此外,ssGSEA显示,在GC方面,预测特征与免疫细胞浸润具有很强的相关性。此外,我们强调,抗免疫检查点疗法与常规化疗药物联合使用,可能更适合高危患者。GC细胞系与正常细胞系LINC01315、AP003392.1、AP000695.2、HAGLR的表达水平差异显著。因此,这6种PRlncRNAs可以作为GC后续诊断、治疗、预后预测和机制研究的重要预后生物标志物。

著录项

获取原文

客服邮箱:kefu@zhangqiaokeyan.com

京公网安备:11010802029741号 ICP备案号:京ICP备15016152号-6 六维联合信息科技 (北京) 有限公司©版权所有
  • 客服微信

  • 服务号