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Selective Constraint Dominates the Evolution of Genes Expressed in a Novel Reproductive Gland

机译:选择性约束主导着在新型生殖腺中表达的基因的进化

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摘要

One striking pattern in molecular evolution is that genes encoding proteins involved in reproduction tend to evolve rapidly. Seminal fluid proteins frequently exhibit this pattern and directly affect multiple reproductive processes including enhancing sperm performance and mediating postmating sexual selection. Here, we investigate molecular evolutionary patterns of genes expressed in the foam gland of Japanese quail (Coturnix japonica), a novel reproductive phenotype. Foam provides an interesting contrast to seminal fluid because it plays a similar functional role, yet is produced, stored, and transferred to females independent of semen. We combined RNA-Seq and comparative genomics to examine evolutionary rates of genes with enriched expression in the foam gland of Japanese quail and those that exhibit enriched expression in two other tissues (testis and liver) and with broadly expressed genes. Overall, we found pronounced heterogeneity in evolutionary rates. Foam gland genes evolved under strong evolutionary constraint, whereas testis genes evolved rapidly and sometimes adaptively. These striking differences were robust to variation in gene expression. Genes with enriched expression in the foam gland did not show major shifts in selective pressure after the quail and chicken lineages split; in contrast, testis-expressed genes experienced a burst of accelerated evolution specifically along the Coturnix lineage. Our work demonstrates that, as a class, genes expressed in the novel foam gland experience different selection regimes than genes expressed in many other tissues producing seminal fluid proteins. Our results also highlight the importance of selective constraint in shaping the evolution of male reproductive genes.
机译:分子进化的一个显著模式是,编码参与繁殖的蛋白质的基因往往进化迅速。蛋白经常表现出这种模式,并直接影响多种生殖过程,包括增强精子性能和介导交配后性选择。在这里,我们研究了日本鹌鹑(Coturnix japonica)泡沫腺中表达的基因的分子进化模式,这是一种新的生殖表型。泡沫与精液形成了有趣的对比,因为它具有类似的功能作用,但独立于精液产生、储存和转移到女性身上。我们将RNA-Seq和比较基因组学相结合,研究了在日本鹌鹑泡沫腺中表达丰富的基因的进化速率,以及在其他两个组织(睾丸和肝脏)中表现出丰富表达的基因以及广泛表达的基因。总体而言,我们发现进化率存在明显的异质性。泡沫腺基因在强大的进化约束下进化,而睾丸基因进化迅速,有时是适应性的。这些显著的差异对基因表达的变异是稳健的。在泡沫腺中表达丰富的基因在鹌鹑和鸡谱系分裂后没有显示出选择压力的重大变化;相比之下,睾丸表达的基因经历了加速进化的爆发,特别是沿着Coturnix谱系。我们的研究表明,作为一个类别,在新型泡沫腺中表达的基因与在产生蛋白的许多其他组织中表达的基因经历不同的选择机制。我们的研究结果还强调了选择性约束在塑造雄性生殖基因进化中的重要性。

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