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Protein Conformational Diversity Correlates with Evolutionary Rate

机译:蛋白质构象多样性与进化速率相关

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摘要

Native state of proteins is better represented by an ensemble of conformers in equilibrium than by only one structure. The extension of structural differences between conformers characterizes the conformational diversity of the protein. In this study,we found a negative correlation between conformational diversity and protein evolutionary rate. Conformational diversity was expressed as the maximum root mean square deviation (RMSD) between the available conformers in Conformational Diversity of Native State database. Evolutionary rate estimations were calculated using 16 different species compared with human sharing at least 700 orthologous proteins with known conformational diversity extension. The negative correlation found is independent of the protein expression level and comparable in magnitude and sign with the correlation between gene expression level and evolutionary rate. Our findings suggest that the structural constraints underlying protein dynamism, essential for protein function, couldmodulate protein divergence.
机译:蛋白质的天然状态最好由平衡的构象集合来表示,而不是仅由一种结构来表示。构象之间结构差异的扩展表征了蛋白质的构象多样性。在这项研究中,我们发现构象多样性与蛋白质进化速率呈负相关。构象多样性表示为原生状态构象多样性数据库中可用构象之间的最大均方根偏差 (RMSD)。使用 16 种不同物种计算进化速率估计值,与人类共享至少 700 种具有已知构象多样性扩展的直系同源蛋白进行比较。发现的负相关性与蛋白质表达水平无关,并且在大小和符号上与基因表达水平和进化速率之间的相关性相当。我们的研究结果表明,蛋白质活力背后的结构限制对蛋白质功能至关重要,可以调节蛋白质的分化。

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