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A Generalized Approach for Automatic 3-D Geometry Assessment of Blood Vessels in Transverse Ultrasound Images Using Convolutional Neural Networks

机译:一种使用卷积神经网络对横向超声图像中血管进行自动三维几何评估的通用方法

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摘要

Accurate 3-D geometries of arteries and veins are important clinical data for diagnosis of arterial disease and intervention planning. Automatic segmentation of vessels in the transverse view suffers from the low lateral resolution and contrast. Convolutional neural networks are a promising tool for automatic segmentation of medical images, outperforming the traditional segmentation methods with high robustness. In this study, we aim to create a general, robust, and accurate method to segment the lumen–wall boundary of healthy central and peripheral vessels in large field-of-view freehand ultrasound (US) datasets. Data were acquired using the freehand US, in combination with a probe tracker. A total of ±36 000 cross-sectional images, acquired in the common, internal, and external carotid artery ( ${N} = 37$ ), in the radial, ulnar artery, and cephalic vein ( ${N} = 12$ ), and in the femoral artery ( ${N} = 5$ ) were included. To create masks (of the lumen) for training data, a conventional automatic segmentation method was used. The neural networks were trained on: 1) data of all vessels and 2) the carotid artery only. The performance was compared and tested using an open-access dataset. The recall, precision, DICE, and intersection over union (IoU) were calculated. Overall, segmentation was successful in the carotid and peripheral arteries. The Multires U-net architecture performs best overall with DICE = 0.93 when trained on the total dataset. Future studies will focus on the inclusion of vascular pathologies.
机译:动脉和静脉的精确 3D 几何形状是动脉疾病诊断和干预计划的重要临床数据。在横向视图中自动分割血管会受到横向分辨率和对比度低的影响。卷积神经网络是一种很有前途的医学图像自动分割工具,其性能优于传统的分割方法,具有很高的鲁棒性。在这项研究中,我们旨在创建一种通用、稳健和准确的方法,在大型视场徒手超声 (US) 数据集中分割健康中央和外周血管的管腔-壁边界。使用徒手 US 与探针跟踪器相结合获取数据。共纳入±36 000张横断面图像,分别采集于颈总动脉、颈内动脉和颈外动脉(${N} = 37$)、桡动脉、尺动脉和头静脉(${N} = 12$)以及股动脉(${N} = 5$)。为了为训练数据创建(流明)掩码,使用了传统的自动分割方法。神经网络的训练基于:1)所有血管的数据和2)仅颈动脉。使用开放获取的数据集对性能进行了比较和测试。计算召回率、精确率、DICE和并集交集(IoU)。总体而言,颈动脉和外周动脉的分割是成功的。Multires U-net 架构在总数据集上训练时,整体表现最佳,DICE = 0.93。未来的研究将集中在血管病理学的纳入上。

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