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Molecular evidence of intertidal habitats selecting for repeated ice-binding protein evolution in invertebrates

机译:无脊椎动物潮间带生境选择重复冰结合蛋白进化的分子证据

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摘要

Ice-binding proteins (IBPs) have evolved independently in multiple taxonomic groups to improve their survival at sub-zero temperatures. Intertidal invertebrates in temperate and polar regions frequently encounter sub-zero temperatures, yet there is little information on IBPs in these organisms. We hypothesized that there are far more IBPs than are currently known and that the occurrence of freezing in the intertidal zone selects for these proteins. We compiled a list of genome-sequenced invertebratesacross multiple habitats and a list of known IBP sequences and used BLAST to identify a wide array of putative IBPs in those invertebrates. We found that the probability of an invertebrate species having an IBP was significantly greater in intertidal species than in those primarily found in open ocean or freshwater habitats. These intertidal IBPs had high sequence similarity to fish and tick antifreeze glycoproteins and fish type II antifreeze proteins. Previously established classifiers based on machine learning techniques further predicted ice-binding activity in the majority of our newly identified putative IBPs. We investigated the potential evolutionary origin of one putative IBP from the hard-shelled mussel Mytilus coruscus and suggest that it arose through gene duplication and neofunctionalization. We show that IBPs likely readily evolve in response to freezing risk and that there is an array of uncharacterized IBPs, and highlight the need for broader laboratory-based surveys of the diversityof ice-binding activity across diverse taxonomic and ecological groups.
机译:冰结合蛋白 (IBP) 在多个分类群中独立进化,以提高它们在零下温度下的存活率。温带和极地地区的潮间带无脊椎动物经常遇到零度以下的温度,但关于这些生物体内IBP的信息很少。我们假设IBPs的数量比目前已知的要多得多,并且潮间带冻结的发生选择了这些蛋白质。我们编制了一份跨越多个栖息地的基因组测序无脊椎动物列表和一份已知IBP序列列表,并使用BLAST鉴定了这些无脊椎动物中的各种假定IBP。我们发现,潮间带物种具有IBP的概率明显高于主要在开阔海洋或淡水栖息地发现的物种。这些潮间带IBPs与鱼类和蜱类抗冻糖蛋白以及鱼类II型抗冻蛋白具有高度的序列相似性。先前建立的基于机器学习技术的分类器进一步预测了我们新发现的大多数假定IBP中的冰结合活动。我们研究了硬壳贻贝Mytilus coruscus中一种假定IBP的潜在进化起源,并表明它是通过基因复制和新功能化产生的。我们表明,IBPs可能很容易进化以应对冻结风险,并且存在一系列未表征的IBP,并强调需要对不同分类学和生态学群体中冰结合活动的多样性进行更广泛的实验室调查。

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