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Impact of the training loss in deep learning–based CT reconstruction of bone microarchitecture

机译:训练损失对基于深度学习的骨微结构CT重建的影响

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Abstract Purpose Computed tomography (CT) is a technique of choice to image bone structure at different scales. Methods to enhance the quality of degraded reconstructions obtained from low‐dose CT data have shown impressive results recently, especially in the realm of supervised deep learning. As the choice of the loss function affects the reconstruction quality, it is necessary to focus on the way neural networks evaluate the correspondence between predicted and target images during the training stage. This is even more true in the case of bone microarchitecture imaging at high spatial resolution where both the quantitative analysis of bone mineral density (BMD) and bone microstructure is essential for assessing diseases such as osteoporosis. Our aim is thus to evaluate the quality of reconstruction on key metrics for diagnosis depending on the loss function that has been used for training the neural network. Methods We compare and analyze volumes that are reconstructed with neural networks trained with pixelwise, structural, and adversarial loss functions or with a combination of them. We perform realistic simulations of various low‐dose acquisitions of bone microarchitecture. Our comparative study is performed with metrics that have an interest regarding the diagnosis of bone diseases. We therefore focus on bone‐specific metrics such as bone volume and the total volume (BV and TV), resolution, connectivity assessed with the Euler number, and quantitative analysis of BMD to evaluate the quality of reconstruction obtained with networks trained with the different loss functions. Results We find that using L1$L_1$ norm as the pixelwise loss is the best choice compared to L2$L_2$ or no pixelwise loss since it improves resolution without deteriorating other metrics. Visual Geometry Group (VGG) perceptual loss, especially when combined with an adversarial loss, allows to better retrieve topological and morphological parameters of bone microarchitecture compared to Structural SIMilarity (SSIM) index. This however leads to a decreased resolution performance. The adversarial loss enhances the reconstruction performance in terms of BMD distribution accuracy. Conclusions In order to retrieve the quantitative and structural characteristics of bone microarchitecture that are essential for postreconstruction diagnosis, our results suggest to use L1$L_1$ norm as part of the loss function. Then, trade‐offs should be made depending on the application: VGG perceptual loss improves accuracy in terms of connectivity at the cost of a deteriorated resolution, and adversarial losses help better retrieve BMD distribution while significantly increasing the training time.
机译:摘要 目的 计算机断层扫描(CT)是一种在不同尺度上对骨骼结构进行成像的首选技术。提高从低剂量CT数据中获得的降解重建质量的方法最近显示出令人印象深刻的结果,特别是在监督深度学习领域。由于损失函数的选择会影响重建质量,因此有必要关注神经网络在训练阶段评估预测图像与目标图像之间的对应关系的方式。在高空间分辨率的骨微结构成像中更是如此,其中骨密度 (BMD) 和骨微结构的定量分析对于评估骨质疏松症等疾病至关重要。因此,我们的目标是根据用于训练神经网络的损失函数来评估诊断关键指标的重建质量。方法 我们比较和分析使用像素、结构和对抗损失函数或它们的组合训练的神经网络重建的体积。我们对骨微结构的各种低剂量采集进行了逼真的模拟。我们的比较研究是使用对骨骼疾病诊断感兴趣的指标进行的。因此,我们专注于骨骼特异性指标,例如骨体积和总体积(BV 和 TV)、分辨率、用欧拉数评估的连通性以及 BMD 的定量分析,以评估使用不同损失函数训练的网络获得的重建质量。结果 我们发现,与L2$L_2$相比,使用L1$L_1$范数作为像素损失是最佳选择,因为它可以在不恶化其他指标的情况下提高分辨率。与结构相似性 (SSIM) 指数相比,视觉几何组 (VGG) 感知损失,尤其是与对抗性损失相结合时,可以更好地检索骨微结构的拓扑和形态参数。但是,这会导致分辨率性能下降。对抗损失增强了BMD分布精度方面的重建性能。结论 为了检索重建后诊断中至关重要的骨微结构的定量和结构特征,我们建议使用L1$L_1$范数作为损失函数的一部分。然后,应根据应用进行权衡:VGG 感知损耗以降低分辨率为代价提高了连接方面的准确性,对抗性损耗有助于更好地检索 BMD 分布,同时显着增加训练时间。

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