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Identifying Patient Phenotype Cohorts Using Prehospital Electronic Health Record Data

机译:使用院前电子病历数据识别患者表型队列

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Objective: Emergency medical services (EMS) provide critical interventions for patients with acute illness and injury and are important in implementing prehospital emergency care research. Retrospective, manual patient record review, the current reference-standard for identifying patient cohorts, requires significant time and financial investment. We developed automated classification models to identify eligible patients for prehospital clinical trials using EMS clinical notes and compared model performance to manual review. Methods: With eligibility criteria for an ongoing prehospital study of chest pain patients, we used EMS clinical notes (n = 1208) to manually classify patients as eligible, ineligible, and indeterminate. We randomly split these same records into training and test sets to develop and evaluate machine-learning (ML) algorithms using natural language processing (NLP) for feature (variable) selection. We compared models to the manual classification to calculate sensitivity, specificity, accuracy, positive predictive value, and F1 measure. We measured clinical expert time to perform review for manual and automated methods. Results: ML models' sensitivity, specificity, accuracy, positive predictive value, and F1 measure ranged from 0.93 to 0.98. Compared to manual classification (N = 363 records), the automated method excluded 90.9 of records as ineligible and leaving only 33 records for manual review. Conclusions: Our ML derived approach demonstrates the feasibility of developing a high-performing, automated classification system using EMS clinical notes to streamline the identification of a specific cardiac patient cohort. This efficient approach can be leveraged to facilitate prehospital patient-trial matching, patient phenotyping (i.e. influenza-like illness), and create prehospital patient registries.
机译:目的:急诊医疗服务(EMS)为急性疾病和损伤患者提供关键干预措施,在实施院前急诊护理研究中具有重要意义。回顾性手动患者记录审查是当前确定患者队列的参考标准,需要大量的时间和财务投资。我们开发了自动分类模型,以使用EMS临床记录识别符合院前临床试验条件的患者,并将模型性能与人工审查进行比较。方法:根据正在进行的胸痛患者院前研究的资格标准,我们使用 EMS 临床记录 (n = 1208) 手动将患者分类为合格、不合格和不确定。我们将这些相同的记录随机拆分为训练集和测试集,以开发和评估使用自然语言处理 (NLP) 进行特征(变量)选择的机器学习 (ML) 算法。我们将模型与手动分类进行比较,以计算敏感性、特异性、准确性、阳性预测值和 F1 测量值。我们测量了临床专家对手动和自动方法进行审查的时间。结果:ML 模型的敏感性、特异性、准确性、阳性预测值和 F1 测量值范围为 0.93 至 0.98。与手动分类(N = 363 条记录)相比,自动化方法排除了 90.9% 的不合格记录,仅剩下 33 条记录供人工审查。结论:我们的 ML 衍生方法证明了使用 EMS 临床笔记开发高性能自动分类系统的可行性,以简化特定心脏病患者队列的识别。这种有效的方法可用于促进院前患者试验匹配、患者表型分析(即流感样疾病)并创建院前患者登记。

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