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betaLact-Pred: A Predictor Developed for Identification of Beta-Lactamases Using Statistical Moments and PseAAC via 5-Step Rule

机译:betaLact-Pred:一种预测因子,用于通过 5 步法则使用统计矩和 PseAAC 鉴定 β-内酰胺酶

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摘要

Beta-lactamase (beta-lactamase) produced by different bacteria confers resistance against beta-lactam-containing drugs. The gene encoding beta-lactamase is plasmid-borne and can easily be transferred from one bacterium to another during conjugation. By such transformations, the recipient also acquires resistance against the drugs of the beta-lactam family. beta-Lactam antibiotics play a vital significance in clinical treatment of disastrous diseases like soft tissue infections, gonorrhoea, skin infections, urinary tract infections, and bronchitis. Herein, we report a prediction classifier named as betaLact-Pred for the identification of beta-lactamase proteins. The computational model uses the primary amino acid sequence structure as its input. Various metrics are derived from the primary structure to form a feature vector. Experimentally determined data of positive and negative beta-lactamases are collected and transformed into feature vectors. An operating algorithm based on the artificial neural network is used by integrating the position relative features and sequence statistical moments in PseAAC for training the neural networks. The results for the proposed computational model were validated by employing numerous types of approach, i.e., self-consistency testing, jackknife testing, cross-validation, and independent testing. The overall accuracy of the predictor for self-consistency, jackknife testing, cross-validation, and independent testing presents 99.76, 96.07, 94.20, and 91.65, respectively, for the proposed model. Stupendous experimental results demonstrated that the proposed predictor "betaLact-Pred" has surpassed results from the existing methods.
机译:不同细菌产生的β-内酰胺酶(β-内酰胺酶)对含β-内酰胺类药物具有耐药性。编码β-内酰胺酶的基因是质粒携带的,在偶联过程中可以很容易地从一种细菌转移到另一种细菌。通过这种转化,受体也获得了对β-内酰胺家族药物的耐药性。β-内酰胺类抗生素在软组织感染、淋病、皮肤感染、尿路感染、支气管炎等灾难性疾病的临床治疗中起着至关重要的作用。在此,我们报告了一种名为 betaLact-Pred 的预测分类器,用于鉴定 β-内酰胺酶蛋白。计算模型使用初级氨基酸序列结构作为其输入。从主要结构中派生出各种指标以形成特征向量。收集实验确定的阳性和阴性β-内酰胺酶数据并将其转化为特征载体。采用基于人工神经网络的运算算法,将PseAAC中的位置相对特征和序列统计矩进行融合,对神经网络进行训练。通过采用自洽测试、千斤顶测试、交叉验证和独立测试等多种方法验证了所提出的计算模型的结果。自洽性、千斤顶测试、交叉验证和独立测试的预测变量的总体准确率为 99.76%、96。所提模型分别为07%、94.20%和91.65%。惊人的实验结果表明,所提出的预测因子“betaLact-Pred”已经超越了现有方法的结果。

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