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Morphological Image Analysis for Foodborne Bacteria Classification

机译:食源性细菌分类的形态学图像分析

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The hyperspectral imaging methods used previously for analyzing food quality and safety focused on spectral data analysis to elucidate the spectral characteristics relevant to the quality and safety of food and agricultural commodities. However, the use of spatial information, including physical size, geometric characteristics, orientation, shape, color, and texture, in hyperspectral imaging analysis of food safety and quality has been limited. In this study, image processing techniques were employedfor extracting information related to the morphological features offifteen different foodborne bacterial species and serotypes, including eight Gram-negatives and seven Gram-positives, for classification. The values of nine morphological features (maximum axial length, minimum axial length, orientation, equivalent diameter, solidity, extent, perimeter, eccentricity, and equivalent circular diameter) of bacterial cells were calculated from their spectral images at 570 nm, which were selected from hyperspectral images at 89 wavelengths based on peak scattering intensity. First, two classes (Gram-negative and Gram-positive) were classified using a support vector machine (SVM) algorithm, resulted in a classification accuracy of 82.9% and kappa coefficient(kc) of 0.65. Thereafter, a classification model was developed with two features (cell orientation and perimeter) selected by principal component analysis. In addition, a decision tree (DT) algorithm was used for classification with all nine morphological features. With respect to differentiation into two classes (Gram-positive and Gram-negative), the classification accuracy for five selected bacteria species (Staphylococcus aureus, Enterococcus faecalis, Salmonella Typhimurium, Escherichia coli, and Enterobacter cloacaej decreased to 80.0% (0.74 of kc) with the DT algorithm and to only 72.5% (0.64 ofkc) with the SVM algorithm. Thus, the hyperspectral microscopy image analysis with morphological features is limited for classifying foodborne pathogens,so additional spectral features would be helpful for classification offoodborne bacteria.
机译:先前用于分析食品质量和安全性的高光谱成像方法专注于光谱数据分析,以阐明与食品和农产品的质量和安全相关的光谱特性。然而,使用空间信息,包括物理尺寸,几何特性,方向,形状,颜色和质地,在高光谱成像的食品安全和质量的影响中受到限制。在该研究中,采用图像处理技术雇用与六十不同食物中的细菌种类和血清型相关的形态特征有关的提取信息,包括八个克否定和七个革兰氏阳性,用于分类。从570nm的光谱图像计算细菌细胞的九种形态特征(最大轴向长度,最小轴向长度,取向,等效直径,稳定性,圆形直径,偏心,圆形直径,等效圆形直径),其选自570nm基于峰值散射强度的89个波长的高光谱图像。首先,使用支撑向量机(SVM)算法分类两类(革兰氏阴性和革兰氏阳性),导致82.9%和κ系数(KC)的分类精度为0.65。此后,通过主成分分析选择的两个特征(单元取向和周长)开发了分类模型。此外,决策树(DT)算法用于所有九个形态学特征的分类。关于分化为两类(克阳性和革兰氏阴性),五种选定的细菌种类的分类精度(金黄色葡萄球菌,肠球菌粪粪,沙门氏菌毒蕈,大肠杆菌和肠杆菌Cloacej降低至80.0%(KC的0.74)随着DT算法和仅72.5%(0.64个OFKC),SVM算法。因此,具有形态学特征的高光谱显微镜图像分析受到分类食源性病原体的限制,因此额外的光谱特征对于分类的Outognborne细菌有助于额外的光谱特征。

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