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Coupling of twist and writhe in short DNA loops

机译:短DNA环中的扭曲和扭曲耦合

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While bending and twist can be treated as independent degrees of freedom for linear DNAmolecules, the loop closure constraint introduces a coupling between these variables in circularDNA. We performed Monte Carlo simulations of wormlike rods with both bending and twist rigidityin order to study the coupling between the writhe and twist distributions for various DNA lengths.We find that for sufficiently short DNA, the writhe distribution differs from that of a model withbending energy only. We show that the factorization approximation introduced by previousresearchers coincides, within numerical accuracy, with our simulation results, and conclude that the closure constraint is fully accounted for by the White–Fuller relation. Experimental tests of ourresults for short DNA plasmids are proposed.
机译:对于线性DNA分子,可以将弯曲和扭曲视为独立的自由度,而闭环约束条件则在circleDNA中引入了这些变量之间的耦合。为了研究各种长度的DNA的扭曲和扭曲分布之间的耦合,我们对具有弯曲和扭曲刚度的蠕虫状棒进行了蒙特卡罗模拟,发现对于足够短的DNA,扭曲分布与仅具有弯曲能量的模型的扭曲分布不同。我们表明,以前的研究人员引入的因式分解近似值在数值精度范围内与我们的模拟结果吻合,并得出结论,闭合约束完全由White-Fuller关系解释。提出了我们对短DNA质粒结果的实验​​测试。

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