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首页> 外文期刊>The Analyst >Induction and identification of disulfide-intact and disulfide-reduced β-subunit of Shiga toxin 2 from Escherichia coli O157:H7 using MALDI-TOF-TOF-MS/MS and top-down proteomics
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Induction and identification of disulfide-intact and disulfide-reduced β-subunit of Shiga toxin 2 from Escherichia coli O157:H7 using MALDI-TOF-TOF-MS/MS and top-down proteomics

机译:使用MALDI-TOF-TOF-MS / MS和自上而下的蛋白质组学方法诱导和鉴定大肠杆菌O157:H7的志贺毒素2的二硫键完整和二硫键还原的β亚基

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摘要

The disulfide-intact and disulfide-reduced b-subunit of Shiga toxin 2 (b-Stx2) from Escherichia colinO157:H7 (strain EDL933) has been identified by matrix-assisted laser desorption/ionization time-offlight-ntime-of-flight tandem mass spectrometry (MALDI-TOF-TOF-MS/MS) and top-downnproteomic analysis using software developed in-house. E. coli O157:H7 was induced to express Stx2 bynculturing on solid agar media supplemented with 10–50 ng mLu00021 of ciprofloxacin (CP). Bacterial cellnlysates at each CP concentration were analyzed by MALDI-TOF-MS. A prominent ion at mass-tochargen(m/z) u00037820 was observed for the CP concentration range: 10–50 ng mLu00021, reaching a maximumnsignal intensity at 20 ng mLu00021. Complex MS/MS data were obtained of the ion at m/z u00037820 by postsourcendecay resulting in top-down proteomic identification as the mature, signal peptide-removed,ndisulfide-intact b-Stx2. Eight fragment ion triplets (each spaced Dm/z u000333 apart) were also observednresulting from backbone cleavage between the two cysteine residues (that form the intra-molecularndisulfide bond) and symmetric and asymmetric cleavage of the disulfide bond. The middle fragment ionnof each triplet, from symmetric disulfide bond cleavage, was matched to an in silico fragment ionnformed from cleavage of the backbone at a site adjacent to an aspartic acid or glutamic acid residue.nThe flanking fragment ions of each triplet, from asymmetric disulfide bond cleavage, were not matchednbecause their corresponding in silico fragment ions are not represented in the database. Easier toninterpret MS/MS data were obtained for the disulfide-reduced b-Stx2 which resulted in an improvedntop-down identification.
机译:已通过基质辅助激光解吸/电离时间-飞行时间-飞行时间串联测定了大肠杆菌埃希氏菌O157:H7(菌株EDL933)的志贺毒素2(b-Stx2)的二硫键完整和二硫键还原的b亚基。使用内部开发的软件进行质谱分析(MALDI-TOF-TOF-MS / MS)和自上而下的蛋白质组学分析。通过在补充有10–50 ng mLu00021环丙沙星(CP)的固体琼脂培养基上培养,可以诱导O157:H7大肠杆菌表达Stx2。通过MALDI-TOF-MS分析每种CP浓度下的细菌纤维素溶解产物。在CP浓度范围:10–50 ng mLu00021处,观察到质荷数(m / z)u00037820处有一个突出的离子,在20 ng mLu00021处达到最大信号强度。通过后源衰减在m / z u00037820处获得离子的复杂MS / MS数据,导致自上而下的蛋白质组学鉴定为成熟的,去除了信号肽的,二硫键完整的b-Stx2。由于两个半胱氨酸残基之间的骨架裂解(形成分子内二硫键)以及二硫键的对称和不对称裂解,还观察到八个碎片离子三联体(每个离子间Dm / z u000333隔开)。通过对称的二硫键裂解,每个三联体的中间碎片离子与在天冬氨酸或谷氨酸残基相邻的位点上骨架的裂解形成的硅链片段与硅胶碎片相匹配。每个三联体的侧翼碎片离子来自不对称的二硫键。键断裂未匹配,因为其相应的计算机片段离子未在数据库中显示。对于二硫化物还原的b-Stx2,获得更容易的吨解MS / MS数据,从而可以实现自上而下的识别。

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  • 来源
    《The Analyst》 |2011年第8期|p.1739-1746|共8页
  • 作者单位

    Western Regional Research Center, Agricultural Research Service, U.S.Department of Agriculture, 800 Buchanan Street, Albany, CA, 94710,USA. E-mail: clifton.fagerquist@ars.usda.gov† Electronic supplementary information (ESI) available: See DOI:10.1039/c0an00909a;

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