...
首页> 外文期刊>The Science of the Total Environment >Application of a new targeted low density microarray and conventional biomarkers to evaluate the health status of marine mussels: A field study in Sardinian coast, Italy
【24h】

Application of a new targeted low density microarray and conventional biomarkers to evaluate the health status of marine mussels: A field study in Sardinian coast, Italy

机译:新型靶向低密度微阵列和常规生物标记物在评估海洋贻贝健康状况中的应用:意大利撒丁岛海岸的实地研究

获取原文
获取原文并翻译 | 示例
   

获取外文期刊封面封底 >>

       

摘要

In the present study, we investigated the health status of marine mussels (Mytilus galloprovincialis) caged and deployed at three different sites on the Sardinian coastline characterized by different levels of contamination: Fornelli (F, the reference site), Cala Real (CR), and Porto Torres (PT). A new low density oligonucleotide microarray was used to investigate global gene expression in the digestive gland of mussels. Target genes were selected to cover most of the biological processes involved in the stress response in bivalve mollusks (e.g. DNA metabolism, translation, immune response, cytoskeleton organization). A battery of classical biomarkers was also employed to complement the gene expression analyses. Chemical analysis revealed higher loads of heavy metals (Pb and Cu) and total polycyclic aromatic hydrocarbons (PAHs) at PT compared to the other sites. In mussels deployed at CR, functional genomics analysis of the microarray data rendered 78 differentially expressed genes (DEGs) involved in 11 biological processes. Animals exposed at PT had 105 DEGs that were characterized by the regulation of 14 biological processes, including mitochondrial activity, adhesion to substrate, DNA metabolism, translation, metal resistance, and cytoskeleton organization. Biomarker data (lysosomal membrane stability, lysosomal/cytoplasm volume ratio, lipofuscin accumulation, metallothionein content, micronucleus frequency, and cytoskeleton alteration) were in trend with transcriptomic output. Biomarker data were integrated using the Mussel Expert System (MES), allowing defining the area in which the presence of chemicals is toxic for mussels. Our study provides the opportunity to adopt a new approach of integrating transcriptomic (microarray) results with classical biomarkers to assess the impact of pollutants on marine mussels in biomonitoring programs.
机译:在本研究中,我们调查了笼养在撒丁岛海岸线上三个不同污染程度不同的地点的网箱贻贝(Mytilus galloprovincialis)的健康状况:Fornelli(F,参考地点),Cala Real(CR),和Porto Torres(PT)。一种新型的低密度寡核苷酸微阵列用于研究贻贝消化腺中的整体基因表达。选择目标基因以涵盖双壳软体动物应激反应中涉及的大多数生物过程(例如DNA代谢,翻译,免疫反应,细胞骨架组织)。还使用了一系列经典的生物标志物来补充基因表达分析。化学分析表明,与其他站点相比,PT的重金属(Pb和Cu)和总多环芳烃(PAHs)的负载量更高。在CR部署的贻贝中,对微阵列数据进行功能基因组学分析,得出了涉及11个生物学过程的78个差异表达基因(DEG)。在PT暴露的动物具有105个DEG,其特征在于调节14个生物学过程,包括线粒体活性,对底物的粘附,DNA代谢,翻译,金属抗性和细胞骨架组织。生物标志物数据(溶酶体膜稳定性,溶酶体/细胞质体积比,脂褐素积累,金属硫蛋白含量,微核频率和细胞骨架改变)与转录组输出呈趋势。生物标志物数据使用贻贝专家系统(MES)进行了整合,从而可以定义化学物质对贻贝有毒的区域。我们的研究提供了采用新方法将转录组(微阵列)结果与经典生物标志物整合在一起的机会,以评估生物监测计划中污染物对海洋贻贝的影响。

著录项

  • 来源
    《The Science of the Total Environment》 |2018年第1期|319-328|共10页
  • 作者单位

    Department of Sciences and Technological Innovation (DiSIT), University of Piemonte Orientale “A. Avogadro”,Laboratory of EnvironmentalChemistry and Toxicology, IRCCS - Istituto di Ricerche Farmacologiche Mario Negri;

    Department of Sciences and Technological Innovation (DiSIT), University of Piemonte Orientale “A. Avogadro”;

    Istituto Zooprofilattico Sperimentale della Sardegna;

    Istituto Zooprofilattico Sperimentale della Sardegna;

    University of Padova;

    University of Padova;

    School of Biological and Marine Sciences, University of Plymouth;

    Department of Sciences and Technological Innovation (DiSIT), University of Piemonte Orientale “A. Avogadro”,Laboratory of EnvironmentalChemistry and Toxicology, IRCCS - Istituto di Ricerche Farmacologiche Mario Negri;

    Department of Sciences and Technological Innovation (DiSIT), University of Piemonte Orientale “A. Avogadro”,Laboratory of Biochemistry and Environmental Toxicology, ISA;

  • 收录信息
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类
  • 关键词

    Biomarkers; Targeted microarray; Mussels; Data integration;

    机译:生物标记物;靶向微阵列;贻贝;数据整合;

相似文献

  • 外文文献
获取原文

客服邮箱:kefu@zhangqiaokeyan.com

京公网安备:11010802029741号 ICP备案号:京ICP备15016152号-6 六维联合信息科技 (北京) 有限公司©版权所有
  • 客服微信

  • 服务号