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Mechanism by which 2,2,2-trifluoroethanol/water mixtures stabilize secondary-structure formation in peptides: A molecular dynamics study

机译:2,2,2-三氟乙醇/水混合物稳定肽中二级结构形成的机理:分子动力学研究

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摘要

Molecular dynamics simulation techniques have been used to investigate the effect of 2,2,2-trifluoroethanol (TFE) as a cosolvent on the stability of three different secondary structure-forming peptides: the α-helix from Melittin, the three-stranded β-sheet peptide Betanova, and the β-hairpin 41-56 from the B1 domain of protein G. The peptides were studied in pure water and 30% (vol/vol) TFE/water mixtures at 300 K. The simulations suggest that the stabilizing effect of TFE is induced by the preferential aggregation of TFE molecules around the peptides. This coating displaces water, thereby removing alternative hydrogen-bonding partners and providing a low dielectric environment that favors the formation of intrapeptide hydrogen bonds. Because TFE interacts only weakly with nonpolar residues, hydrophobic interactions within the peptides are not disrupted. As a consequence, TFE promotes stability rather than inducing denaturation.
机译:分子动力学模拟技术已用于研究2,2,2-三氟乙醇(TFE)作为助溶剂对三种不同的二级结构形成肽的稳定性的影响:Melittin的α-螺旋,三链β-表层肽Betanova和来自蛋白G B1结构域的β-发夹蛋白41-56。在300 K的纯水和30%(vol / vol)TFE /水混合物中研究了该肽。模拟表明,稳定作用TFE的突变是由TFE分子在肽周围的优先聚集诱导的。该涂层置换了水,从而去除了替代性的氢键伙伴,并提供了一个低介电环境,有利于形成肽内氢键。由于TFE与非极性残基的相互作用很小,因此肽内的疏水相互作用不会被破坏。结果,TFE促进稳定性而不是引起变性。

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