Highly Accurate and Efficient Data-Driven Methods for Genotype Imputation

Olivia Choudhury; Ankush Chakrabarty; Scott J. Emrich

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Highly Accurate and Efficient Data-Driven Methods for Genotype Imputation

机译：基因型插补的高精度，高效数据驱动方法

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摘要

High-throughput sequencing techniques have generated massive quantities of genotype data. Haplotype phasing has proven to be a useful and effective method for analyzing these data. However, the quality of phasing is undermined due to missing information.

机译：高通量测序技术已经产生了大量的基因型数据。单倍型定相已被证明是分析这些数据的有用和有效的方法。但是，由于缺少信息，定相质量会受到影响。

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来源
《IEEE/ACM transactions on computational biology and bioinformatics》 |2019年第4期|1107-1116|共10页
作者
Olivia Choudhury; Ankush Chakrabarty; Scott J. Emrich;
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作者单位

Department of Computer Science and Engineering University of Notre Dame Notre Dame IN;

Harvard University Cambridge MA;

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原文格式 PDF
正文语种 eng
中图分类
关键词
Organisms; Hidden Markov models; Data models; Tools; Sociology; Statistics;

机译：生物;隐藏的马尔可夫模型;数据模型;工具;社会学;统计;

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专利

1. A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies [J] . Bryan N. Howie, Peter Donnelly, Jonathan Marchini PLoS Genetics . 2009,第6期

机译：灵活，准确的基因型插补方法，用于下一代全基因组关联研究
2. Imputation without doing imputation: a new method for the detection of non-genotyped causal variants. [J] . Richard Howey, Heather J Cordell Genetic epidemiology. . 2014,第3期

机译：不进行插补的插补：一种用于检测非基因型因果变异的新方法。
3. Accurate and highly efficient calculation of the highly excited pure OH stretching resonances of O(D-1)HCl, using a combination of methods [J] . Bian WS, Poirier B The Journal of Chemical Physics . 2004,第10期

机译：结合多种方法准确高效地计算O（D-1）HCl的高激发纯OH拉伸共振
4. An efficient process for enhancing genotype imputation in Genome-wide association studies using high performance computing [C] . Kasikrit Damkliang, Pichaya Tandayya, Unitsa Sangket, International computer science and engineering conference . 2015

机译：使用高性能计算在全基因组关联研究中增强基因型归因的有效过程
5. Next Generation of Genotype Imputation Methods [D] . Das, Sayantan. 2017

机译：下一代基因型估算方法
6. A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies [O] . Bryan N. Howie, Peter Donnelly, Jonathan Marchini 2009

机译：灵活准确的基因型插补方法用于下一代基因组-全关联研究
7. A Fast Data-Driven Method for Genotype Imputation, Phasing, and Local Ancestry Inference: MendelImpute.jl [O] . Benjamin B. Chu, Eric M. Sobel, Rory Wasiolek, 2020

机译：一种基因型归责，阶段和本地祖先推断的快速数据驱动方法：mendelimpute.jl

Highly Accurate and Efficient Data-Driven Methods for Genotype Imputation

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