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Molecular phylogeny of glass sponges (Porifera, Hexactinellida): increased taxon sampling and inclusion of the mitochondrial protein-coding gene, cytochrome oxidase subunit I

机译:玻璃海绵的分子系统发育(Porifera,Hexactinellida):增加分类群采样并包含线粒体蛋白编码基因,细胞色素氧化酶亚基I

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摘要

Marine sponges of the class Hexactinellida (glass sponges) are among the most understudied groups of Porifera, and molecular approaches to investigating their evolution have only recently emerged. Although these first results appeared reliable as they largely corroborated morphology-based hypotheses, they were almost exclusively based on ribosomal RNA genes (rDNA) and should, therefore, be further tested with independent types of genetic data, such as protein-coding genes. To this end, we established the mitochondrial-encoded cytochrome oxidase subunit I gene (COI) as an additional marker, and conducted phylogenetic analyses on DNA- and amino-acid level, as well as a supermatrix analysis based on combined COI DNA and rDNA alignments. Furthermore, we increased taxon sampling compared to previous studies by adding seven additional species. The COI-based phylogenies were largely congruent with the rDNA-based phylogeny but suffered from poor bootstrap support for many nodes. However, addition of the COI sequences to the rDNA data set increased resolution of the overall molecular phylogeny. Thus, although obtaining COI sequences from glass sponges turned out to be quite challenging, this gene appears to be a valuable supplement to rDNA data for molecular evolutionary studies of this group. Some implications of our extended phylogeny for the evolution and systematics of Hexactinellida are discussed.
机译:Hexactinellida(玻璃海绵)类的海洋海绵是Porifera最为未被研究的群体之一,研究分子进化的分子方法只是最近才出现。尽管这些最初的结果由于它们在很大程度上证实了基于形态的假设而显得可靠,但它们几乎完全基于核糖体RNA基因(rDNA),因此应使用独立类型的遗传数据,例如蛋白质编码基因,进行进一步的测试。为此,我们建立了线粒体编码的细胞色素氧化酶亚基I基因(COI)作为附加标记,并对DNA和氨基酸水平进行了系统发育分析,并基于组合的COI DNA和rDNA比对进行了超基质分析。此外,与以前的研究相比,我们增加了7个物种增加了分类单元采样。基于COI的系统发育与基于rDNA的系统发育在很大程度上是一致的,但是对许多节点的自举支持较差。但是,将COI序列添加到rDNA数据集可以提高总体分子系统发育的分辨率。因此,尽管从玻璃海绵中获得COI序列非常具有挑战性,但该基因似乎是rDNA数据的有价值的补充,用于该组的分子进化研究。讨论了我们扩展系统发育对六线虫的进化和系统学的一些启示。

著录项

  • 来源
    《Hydrobiologia》 |2012年第1期|p.11-20|共10页
  • 作者单位

    Department of Earth &amp Environmental Sciences, Palaeontology &amp Geobiology, LMU Munich, Richard-Wagner-Straße 10, 80333, Munich, Germany;

    Department of Ecology, Evolution &amp Organismal Biology, Iowa State University, 253 Bessey Hall, Ames, IA, 50011, USA;

    Department of Ecology, Evolution &amp Organismal Biology, Iowa State University, 253 Bessey Hall, Ames, IA, 50011, USA;

    Department of Earth &amp Environmental Sciences, Palaeontology &amp Geobiology, LMU Munich, Richard-Wagner-Straße 10, 80333, Munich, Germany;

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  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类
  • 关键词

    Porifera; Hexactinellida; Phylogeny; Cytochrome oxidase subunit I; Ribosomal DNA;

    机译:紫ifer;半乳糖;系统发育;细胞色素氧化酶亚基I;核糖体DNA;

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