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Metabolomics of Microliter Hemolymph Samples Enables an Improved Understanding of the Combined Metabolic and Transcriptional Responses of Daphnia magna to Cadmium

机译:微升血淋巴样品的代谢组学使对水蚤(Daphnia magna)对镉的组合代谢和转录反应的了解得到了更好的理解。

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摘要

Omic technologies offer unprecedented opportunities to better understand mode(s)-of-toxicity and downstream secondary effects by providing a holistic view of the molecular changes underlying physiological disruption. Crustacean hemolymph represents a largely untapped biochemical resource for such toxicity studies. We sought to characterize changes in the hemolymph metabolome and whole-body transcriptome to reveal early processes leading to chronic toxicity in the indicator species, Daphnia magna, after 24-h sublethal cadmium exposure (18 μg/L, corresponding to 1/10 LC_(50)). We first confirmed that metabolites can be detected and identified in small volumes (~3 - 6μL) of D. magna hemolymph using Fourier transform ion cyclotron resonance mass spectrometry and NMR spectroscopy. Subsequently, mass spectrometry based metabolomics of hemolymph identified disruption to two major classes of metabolites: amino acids and fatty acids. These findings were compared to differentially expressed genes identified by a D. magna 44k oligonudeotide microarray, which included decreased levels of digestive enzymes and increased expression of cuticle proteins and oxidative stress response genes. The combination of metabolic and transcriptional changes revealed through KEGG pathway analysis and gene ontology, respectively, enabled a more complete understanding or how cadmium disrupts nutrient uptake and metabolism, ultimately resulting in decreased energy reserves and chronic toxicity.
机译:通过提供对生理破坏基础分子变化的全面了解,Omic技术提供了前所未有的机会,可以更好地了解毒性模式和下游的次级效应。甲壳类血淋巴是此类毒性研究的主要未开发生化资源。我们试图表征血淋巴代谢组和全身转录组的变化,以揭示导致24小时亚致死镉暴露(18μg/ L,相当于1/10 LC_( 50))。我们首先证实,使用傅立叶变换离子回旋共振质谱和NMR光谱法可以检测和鉴定小量(〜3-6μL)的D. magna血淋巴中的代谢物。随后,基于质谱的血淋巴代谢组学确定了对两种主要代谢产物的破坏:氨基酸和脂肪酸。将这些发现与通过D. magna 44k寡核苷酸微阵列鉴定的差异表达基因进行了比较,该基因包括降低的消化酶水平和增加的表皮蛋白和氧化应激反应基因的表达。分别通过KEGG途径分析和基因本体论揭示的代谢和转录变化的组合,使人们能够更全面地了解镉如何破坏营养物的吸收和代谢,最终导致能量储备下降和慢性毒性。

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  • 来源
    《Environmental Science & Technology》 |2011年第8期|p.3710-3717|共8页
  • 作者单位

    National Exposure Research Laboratory, U.S. Environmental Protection Agency, Cincinnati, Ohio, United States,Department of Nutritional Sciences and Toxicology, UC Berkeley, Berkeley, California, United States;

    School of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, U.K.;

    Bruker-Biospin, Billerica, Massachusetts, United States;

    Bruker-Biospin, Billerica, Massachusetts, United States;

    Department of Nutritional Sciences and Toxicology, UC Berkeley, Berkeley, California, United States;

    Department of Nutritional Sciences and Toxicology, UC Berkeley, Berkeley, California, United States;

    Department of Nutritional Sciences and Toxicology, UC Berkeley, Berkeley, California, United States;

    Department of Nutritional Sciences and Toxicology, UC Berkeley, Berkeley, California, United States;

    Department of Nutritional Sciences and Toxicology, UC Berkeley, Berkeley, California, United States;

    School of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, U.K.;

  • 收录信息 美国《科学引文索引》(SCI);美国《工程索引》(EI);美国《生物学医学文摘》(MEDLINE);美国《化学文摘》(CA);
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  • 正文语种 eng
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