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首页> 外文期刊>BMC Genomics >Deciphering the molecular adaptation of the king scallop ( Pecten maximus ) to heat stress using transcriptomics and proteomics
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Deciphering the molecular adaptation of the king scallop ( Pecten maximus ) to heat stress using transcriptomics and proteomics

机译:通过转录组织和蛋白质组学解密王扇贝(Pecten Maximus)的分子适应来热应激

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摘要

The capacity of marine species to survive chronic heat stress underpins their ability to survive warming oceans as a result of climate change. In this study RNA-Seq and 2-DE proteomics were employed to decipher the molecular response of the sub-tidal bivalve Pecten maximus, to elevated temperatures. Individuals were maintained at three different temperatures (15, 21 and 25?°C) for 56?days, representing control conditions, maximum environmental temperature and extreme warming, with individuals sampled at seven time points. The scallops thrived at 21?°C, but suffered a reduction in condition at 25?°C. RNA-Seq analyses produced 26,064 assembled contigs, of which 531 were differentially expressed, with putative annotation assigned to 177 transcripts. The proteomic approach identified 24 differentially expressed proteins, with nine identified by mass spectrometry. Network analysis of these results indicated a pivotal role for GAPDH and AP-1 signalling pathways. Data also suggested a remodelling of the cell structure, as revealed by the differential expression of genes involved in the cytoskeleton and cell membrane and a reduction in DNA repair. They also indicated the diversion of energetic metabolism towards the mobilization of lipid energy reserves to fuel the increased metabolic rate at the higher temperature. This work provides preliminary insights into the response of P. maximus to chronic heat stress and provides a basis for future studies examining the tipping points and energetic trade-offs of scallop culture in warming oceans.
机译:海洋物种以存活慢性热压力的能力为其在气候变化而使温暖海洋生存的能力下。在该研究中,使用RNA-SEQ和2-DE蛋白质组学来破译亚潮双平均果实最大值的分子响应,以升高的温度。个体在三个不同的温度(15,21和25℃)保持56℃,表示控制条件,最大环境温度和极端变暖,在七个时间点采样。扇贝在21℃下茁壮成长,但在25℃下遭受条件下降。 RNA-SEQ分析产生了26,064个组装的Contig,其中531分差异表达,具有指定的注释分配给177个转录物。蛋白质组学方法鉴定了24个差异表达的蛋白质,通过质谱法鉴定了九种。这些结果的网络分析表明了GAPDH和AP-1信号传导途径的关键作用。数据还提出了细胞结构的重塑,如涉及细胞骨架和细胞膜所涉及的基因的差异表达以及DNA修复的减少。他们还表明了能量新陈代谢的转移在动员脂质能量储备,以促进较高温度的代谢率增加。这项工作为P.Maximus对慢性热压力的响应提供了初步见解,为未来的研究提供了审查扇贝文化在变暖海洋中的提取点和精力充沛权衡的基础。

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