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首页> 外文期刊>Journal for ImmunoTherapy of Cancer >484?Bioturing browser: interactively explore public single cell sequencing data
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484?Bioturing browser: interactively explore public single cell sequencing data

机译:484?生物传播浏览器:交互式探索公共单个单元格排序数据

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Background Single-cell sequencing technology has opened an unprecedented ability to interrogate cancer. It reveals significant insights into the intratumoral heterogeneity, metastasis, therapeutic resistance, which facilitates target discovery and validation in cancer treatment. With rapid advancements in throughput and strategies, a particular immuno-oncology study can produce multi-omics profiles for several thousands of individual cells. This overflow of single-cell data poses formidable challenges, including standardizing data formats across studies, performing reanalysis for individual datasets and meta-analysis. Methods N/A Results We present BioTuring Browser, an interactive platform for accessing and reanalyzing published single-cell omics data. The platform is currently hosting a curated database of more than 10 million cells from 247 projects, covering more than 120 immune cell types and subtypes, and 15 different cancer types. All data are processed and annotated with standardized labels of cell types, diseases, therapeutic responses, etc. to be instantly accessed and explored in a uniform visualization and analytics interface. Based on this massive curated database, BioTuring Browser supports searching similar expression profiles, querying a target across datasets and automatic cell type annotation.
机译:背景技术单细胞测序技术开辟了前所未有的询问癌症的能力。它揭示了对肿瘤内异质性,转移,治疗性抗性的显着见解,这促进了癌症治疗中的目标发现和验证。随着吞吐量和策略的快速进步,特定的免疫肿瘤学研究可以为几千个单独的细胞产生多OMICS型材。这种单细胞数据的溢出造成了强大的挑战,包括跨研究的标准化数据格式,对单个数据集进行再分析和元分析。方法N / A结果我们呈现了生物调整浏览器,是用于访问和重新分析公开的单小区OMIC数据的交互式平台。该平台目前正在举办超过247个项目的策划数据库,从247个项目,覆盖超过120种免疫细胞类型和亚型,以及15种不同的癌症类型。所有数据都是通过细胞类型,疾病,治疗性响应等的标准化标签进行处理和注释,以便在统一的可视化和分析界面中立即访问和探索。基于此大规模策划数据库,生物传播浏览器支持搜索类似的表达式配置文件,查询数据集中的目标和自动单元格类型注释。

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