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omicR: A tool to facilitate BLASTn alignments for sequence data

机译:OMICR:一种促进BLASTN对序列数据对齐的工具

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Bioinformatics tools for the analysis of sequencing data, are becoming accessible for most scientists. Beginners who are unfamiliar to these tools can be overwhelmed when learning to handle large sequencing datasets. We announce omicR for Windows, which is a user-friendly tool with a graphical user interface that creates fastA files from sequencing data in tabular format such as genotyping-by-sequencing data. OmicR downloads genomes or other sequence sets from the NCBI web server and creates a genome database from the selected references. Subsequently, the user query sequences are aligned to the references and the alignment results are filtered, selecting the best match per sequence.
机译:对于大多数科学家来说,用于分析测序数据的生物信息学工具越来越多。在学习处理大型测序数据集时,对这些工具不熟悉的初学者可能会被淹没。我们向Windows宣布了Omicr,这是一个用户友好的工具,具有图形用户界面,该图形用户界面从按字形格式中排序数据(如基因分型逐排序数据)创建Fasta文件。 OMICR从NCBI Web服务器下载Genomes或其他序列集,并从所选参考创建一个基因组数据库。随后,用户查询序列与参考序列对齐,并过滤对准结果,选择每个序列的最佳匹配。

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