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Identification of key genes and pathways of diagnosis and prognosis in cervical cancer by bioinformatics analysis

机译:生物信息学分析鉴定宫颈癌诊断和预后的关键基因及途径

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Background Cervical cancer as one of the most common malignant tumors lead to bad prognosis among women. Some researches already focus on the carcinogenesis and pathogenesis of cervical cancer, but it is still necessary to identify more key genes and pathways. Methods Differentially expressed genes were identified by GEO2R from the gene expression omnibus (GEO) website, then gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyzed by DAVID. Meanwhile, protein–protein interaction network was constructed by STRING, and both key genes and modules were found in visualizing network through Cytoscape. Besides, GEPIA did the differential expression of key genes and survival analysis. Finally, the expression of genes related to prognosis was further explored by UNLCAN, oncomine, and the human protein atlas. Results Totally 57 differentially expressed genes were founded, not only enriched in G1/S transition of mitotic cell cycle, mitotic nuclear division, and cell division but also participated in cytokine–cytokine receptor interaction, toll‐like receptor signaling pathway, and amoebiasis. Additionally, 12 hub genes and 3 key modules were screened in the Cytoscape visualization network. Further survival analysis showed that TYMS (OMIM accession number 188350), MCM2 (OMIM accession number 116945), HELLS (OMIM accession number 603946), TOP2A (OMIM accession number 126430), and CXCL8 (OMIM accession number 146930) were associated with the prognosis of cervical cancer. Conclusion This study aim to better understand the characteristics of some genes and signaling pathways about cervical cancer by bioinformatics, and could provide further research ideas to find new mechanism, more prognostic factors, and potential therapeutic targets for cervical cancer.
机译:背景宫颈癌作为最常见的恶性肿瘤之一导致女性预后不良。一些研究已经专注于宫颈癌的致癌和发病机制,但仍有必要鉴定更多的主要基因和途径。方法通过从基因表达(Geo)网站的Geo2R鉴定差异表达的基因,然后通过大卫分析的基因本体(GO)和基因组(Kegg)富集的基因本体(GO)和京都百科全书。同时,通过串构建蛋白质 - 蛋白质相互作用网络,通过Cytoscape在可视化网络中发现了关键基因和模块。此外,Gepia做了关键基因和生存分析的差异表达。最后,通过Unlcan,Oncomsine和人蛋白地图集进一步探索与预后相关的基因的表达。结果完全有57个差异表达基因,不仅富集了有丝分裂细胞周期,有丝分裂核划分和细胞划分的G1 / S转变,还参与了细胞因子 - 细胞因子受体相互作用,易于受体信号传导途径和amoebiasis。此外,在Cytoscape可视化网络中筛选了12个集线基因和3个关键模块。进一步的生存分析表明,TYM(OMIM登录号188350),MCM2(OMIM登录号116945),地狱(OMIM登录号603946),TOP2A(OMIM登录号126430)和CXCL8(OMIM Incession Number 146930)与预后相关联宫颈癌。结论本研究旨在通过生物信息学更好地了解一些关于宫颈癌的一些基因和信号通路的特征,可以提供进一步的研究思想,以寻找新的机制,更多预后因素和宫颈癌的潜在治疗靶标。

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