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首页> 外文期刊>Frontiers in Cell and Developmental Biology >Integrated Analysis of a Competing Endogenous RNA Network Reveals a Prognostic Signature in Kidney Renal Papillary Cell Carcinoma
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Integrated Analysis of a Competing Endogenous RNA Network Reveals a Prognostic Signature in Kidney Renal Papillary Cell Carcinoma

机译:竞争内源性RNA网络的综合分析显示肾肾骨髓乳突癌中的预后签名

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The kidney renal papillary cell carcinoma (KIRP) is a relatively rare type of renal cell carcinoma (RCC). Since now, most of studies on kidney cancer mainly focus on RCC, there has no investigation to find a robust signature to predict the survival outcome of KIRP patients. In this study, we constructed a competing endogenous RNA (ceRNA) network including 1251 lncRNA-miRNA-mRNA interactions. Eight differentially expressed genes (IGF2BP3, PLK1, LINC00200, NCAPG, CENPF, miR-217, GAS6-As1 and LRRC4) based on TCGA database were screened out. Prognostic signature was established by combining univariate cox regression method and a stepwise regression method, with its predictive value validated by time-dependent receiver operating characteristic (ROC) curves. In conclusion, we identified eight prognostic signatures with its ceRNA networks. Our study provided a global view and systematic dissection on KIRP prognosis biomarkers, and the identified eight genes might be acted as novel important prognostic factors involved in KIRP pathogenesis.
机译:肾肾骨髓癌(KIRP)是一种相对罕见的肾细胞癌(RCC)。从现在开始,大多数关于肾癌的研究主要关注RCC,没有调查以预测KIRP患者的存活结果。在这项研究中,我们构建了一种竞争内源性RNA(CERNA)网络,包括1251个LNCRNA-miRNA-mRNA相互作用。筛选出基于TCGA数据库的八种差异表达基因(IGF2BP3,PLK1,LINC00200,NCAPG,CENPF,MIR-217,GAS6-AS1和LRRC4)。通过组合单变量COX回归方法和逐步回归方法建立预后签名,其预测值通过时间依赖的接收器操作特征(ROC)曲线验证。总之,我们确定了与其Cerna网络的八个预后签名。我们的研究为KIRP预后生物标志物提供了全球视野和系统的解剖,并且已确定的八个基因可能是涉及KIRP发病机制的新的重要预后因素。

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