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Integrated Analysis of the Functions and Prognostic Values of RNA-Binding Proteins in Colorectal Cancer

机译:结直肠癌中RNA结合蛋白的功能和预后值综合分析

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摘要

Colorectal cancer (CRC) is one of the most common malignant tumors. Selecting effective treatment for CRC patients, especially in the early stages, remains a challenge due to the lack of adequate biomarkers. Recent evidence suggests that RNA binding proteins (RBPs) play a vital role in development and progression of carcinogenesis. However, their mechanisms in cancer progression are still limited. The role of RBPs in CRC have been poorly understood. 1542 reported RBPs were analyzed between CRC tissues and normal tissues using the Wilcox test to identify differentially expressed RBPs (DE RBPs). Then the potential functions and the prognostic value of these DE RBPs was explored through a systematic bioinformatics analysis. 177 DE RBPs were identified between CRC tissues and normal tissues. A protein-protein interaction (PPI) network was constructed based on DE RBPs, and critical modules were screened. A regulatory network between prognostic DE RBPs and differentially expressed transcription factors (DE TFs) was constructed. Besides, a risk signature was built based on prognostic DE RBPs, which is able to predict overall survival of CRC patients with high accuracy. In conclusion, the results provided a comprehensive understanding of the functions of RBPs in CRC, as well as an RBP-related prognostic signature.
机译:结肠直肠癌(CRC)是最常见的恶性肿瘤之一。选择对CRC患者的有效治疗,特别是在早期阶段,由于缺乏足够的生物标志物,仍然是一个挑战。最近的证据表明RNA结合蛋白(RBPS)在致癌作用的发展和进展中起着至关重要的作用。然而,它们在癌症进展中的机制仍然有限。 RBP在CRC中的作用被理解得很差。在CRC组织和正常组织之间使用WILCOX试验分析RBP,以​​鉴定差异表达的RBPS(DE RBP)。然后通过系统的生物信息学分析探讨了这些DE RBP的潜在功能和预后价值。在CRC组织和正常组织之间鉴定了177 de RBP。基于DE RBP构建蛋白质 - 蛋白质相互作用(PPI)网络,并筛选临界模块。构建了预后rbps与差异表达转录因子(DE TFS)之间的调节网络。此外,基于预后RBP建立了风险签名,能够预测CRC患者高精度的整体存活。总之,结果综合了解CRC在CRC中的函数,以及与RBP相关的预后签名。

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