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首页> 外文期刊>Frontiers in Chemistry >Advanced Chemical Computing Using Discrete Turing Patterns in Arrays of Coupled Cells
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Advanced Chemical Computing Using Discrete Turing Patterns in Arrays of Coupled Cells

机译:使用耦合单元阵列中的离散图案的先进化学计算

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We examine dynamical switching among discrete Turing patterns that enable chemical computing performed by mass-coupled reaction cells arranged as arrays with various topological configurations: three coupled cells in a cyclic array, four coupled cells in a linear array, four coupled cells in a cyclic array and four coupled cells in a branched array. Each cell is operating as a continuous stirred tank reactor, within which the glycolytic reaction takes place, represented by a skeleton inhibitor-activator model where ADP plays the role of activator and ATP is the inhibitor. The mass coupling between cells is assumed to be operating in three possible transport regimes: i) equal transport coefficients of the inhibitor and activator ii) slightly faster transport of the activator, and iii) strongly faster transport of the inhibitor. Each cellular array is characterized by two pairs of tunable parameters, the rate coefficients of the autocatalytic and inhibitory steps, and the transport coefficients of the coupling. Using stability and bifurcation analysis we identified conditions for occurrence of discrete Turing patterns associated with nonuniform stationary states. We found stable symmetric and/or asymmetric discrete Turing patterns coexisting with stable uniform periodic oscillations. To switch from one of the coexisting stable regimes to another we use carefully targeted perturbations, which allows us to build systems of logic gates specific to each topological type of the array, which in turn enables to perform advanced modes of chemical computing. By combining chemical computing techniques in the arrays with glycolytic excitable channels, we propose a cellular assemblage design for advanced chemical computing.
机译:我们在离散图案中检查动态切换,使得通过以各种拓扑结构为阵列排列为阵列的大规模耦合反应电池进行化学计算:在循环阵列中的三个耦合单元,线性阵列中的四个耦合单元,循环阵列中的四个耦合单元分支阵列中的四个耦合细胞。每个细胞作为连续搅拌釜反应器操作,在其中发生糖酵解反应,由骨架抑制剂 - 活化剂模型表示,其中ADP发挥激活剂和ATP是抑制剂。假设细胞之间的质量偶联在三种可能的传送方案中操作:i)抑制剂和活化剂II的等于传输系数II)略微更快地传输活化剂,并且III)强烈地传播抑制剂。每个细胞阵列的特征在于两对可调谐参数,自催化和抑制步骤的速率系数,以及耦合的传输系数。使用稳定性和分叉分析,我们确定了与非均匀固定状态相关的离散图案发生的条件。我们发现稳定的对称和/或不对称离散图案与稳定的均匀周期振荡共存。从其中一个共存稳定的制度切换到另一个我们使用仔细的目标扰动,这使我们能够构建特定于阵列的每个拓扑类型的逻辑门系统,这反过来能够执行高级化学计算模式。通过将化学计算技术与糖浆易激频相结合,我们提出了一种用于高级化学计算的蜂窝组装设计。

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