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首页> 外文期刊>International Journal of Agriculture and Biology >Genome-Wide Identification and Expression Analysis of the Zinc Transporter Protein ZIP Family in Potato (Solanum tuberosum)
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Genome-Wide Identification and Expression Analysis of the Zinc Transporter Protein ZIP Family in Potato (Solanum tuberosum)

机译:马铃薯锌转运蛋白ZIP家族的基因组鉴定及表达分析(Solanum Tuberosum)

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摘要

The ZIP gene family is a metal transporter capable of transporting various cations, including iron, manganese and zinc. Metal transport and balance in plants are very important for growth and development. However, the comprehensive analysis of ZIP genes has not been reported in potato (Solanum tuberosum L.). Based on the whole potato genome data, the members of potato ZIP gene family were identified and systematically analyzed. In total, 29 ZIP proteins from S. tuberosum were identified. Through the establishment of phylogenetic tree, ZIP proteins were divided into three subgroups. Gene structure analysis showed that many genes had multiple introns. Motif analysis showed that these StZIP proteins had similar motif composition patterns. Twenty-nine StZIP genes were located on 7 chromosomes. A cis-element identified that many StZIPs also contain abiotic stress-related elements. A heatmap of the StZIP gene family identified that the genes, only StZIP12, StZIP17 and StZIP26 were expressed in all tissues and organs. A representative member StZIP12 was selected for screening its expression characteristics to identify whether it was induced by Ralstonia solanacearum and abscisic acid (ABA) treatment. Quantitative real-time polymerase chain reaction (qRT-PCR) showed a positive result, which strongly suggested that the gene might be involved in potato response to bacterial wilt associated with ABA signaling pathway. Tissue localization showed that StZIP12 was mainly expressed in phloem and leaf vascular bundles of stem vascular system. These results laid a foundation for further experimental cloning and functional verification, as well as the study of the molecular mechanism of potato resistance to bacterial wilt.
机译:ZIP基因家族是一种能够运输各种阳离子的金属转运蛋白,包括铁,锰和锌。植物中的金属运输和平衡对于增长和发展非常重要。然而,在马铃薯(Solanum Tuberosum L.)中尚未报告ZIP基因的综合分析。基于整个马铃薯基因组数据,鉴定并系统地分析了马铃薯Zip基因系列的成员。共有29种来自S. Tuberosum的Zip蛋白。通过建立系统发育树,将ZIP蛋白分成三个亚组。基因结构分析表明,许多基因具有多个内含子。基序分析表明,这些STZIP蛋白质具有类似的基序组合物图案。在7染色体上位于7颗染色体上。确定许多Stzips还含有非生物应激相关元素。 STZIP基因家族的热爱映射鉴定出该基因,仅在所有组织和器官中表达了STZIP12,STZIP17和STZIP26。选择代表性构件STZIP12以筛选其表达特征以鉴定其是否由Ralstonia Solanacearum和Asscisic酸(ABA)处理诱导。定量实时聚合酶链反应(QRT-PCR)显示出阳性结果,其强烈表明该基因可能参与与与ABA信号通路相关的细菌枯萎物的马铃薯反应。组织定位表明,STZIP12主要在韧皮血管血管系中表达。这些结果为进一步的实验克隆和功能验证奠定了基础,以及对细菌枯萎的马铃薯抗性分子机制的研究。

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