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An Approach to Identify New Pleiotropic Genetic Loci From Publicly Available Univariate GWAS Results

机译:从公开可用的单变量GWAS结果中鉴定新的磷酸遗传基因座的方法

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Abstract The connections between genes and multifactorial polygenic age-related traits are not trivial due to complexity of metabolic networks in an organism, which were primarily adapted to maximize fitness at reproductive age in ancient environments. Given this complexity, pleiotropy in predisposition to complex traits appears to be common phenomenon. Identifying mechanisms of pleiotropic predisposition to multiple age-related traits can be a key factor in developing strategies for extending health-span and lifespan. Correlation between complex traits may be a factor shedding light on these mechanisms. Recently, we used an omnibus test leveraging correlation between multiple age-related traits to gain insights into pleiotropic predisposition to them. The analysis using individual-level data identified large number of new pleiotropic loci and highlighted a novel phenomenon of antagonistic genetic heterogeneity, which was characterized by antagonistic directions of genetic effects for directly correlated traits. Here, we demonstrate feasibility of our approach using summary statistics from univariate genome-wide (GW) association studies (GWAS). Our analysis focused on the results for high density lipoprotein cholesterol (HDL-C) and triglycerides (TG) from the Global Lipids Genetic Consortium, which reported 94 GW significant loci (p≤5×10-8). The traits’ correlation was estimated from the individual level data. Our approach identified 28 loci with pleiotropic predisposition to HDL-C and TG at p≤5×10-8, which did not attain univariate GW significance with either of these traits. Fifteen of them (53%) demonstrated antagonistic heterogeneity. These results show that our approach can be efficiently used in the analysis of summary statistics from published studies to identify novel pleiotropic loci.
机译:摘要基因与多因素多种年龄相关性状的关系由于生物体中代谢网络的复杂性而言,这主要是适应在古代环境中的生殖年龄的健康。鉴于这种复杂性,倾向于复杂的特征的肺炎似乎是常见的现象。鉴定多年与多年相关特征的磷酸化机制可以是开发延伸健康跨度和寿命的策略的关键因素。复杂性状之间的相关性可以是对这些机制的脱落光的因子。最近,我们使用了多个与年龄相关性状之间的综合相关性的综合性,以获得对它们的热熵倾向的洞察力。使用个性级数据的分析确定了大量的新磷酸局部基因座,并强调了拮抗遗传异质性的新颖现象,其特征在于遗传效应的拮抗方向直接相关性状。在这里,我们展示了我们使用单变量基因组(GW)协会研究(GWAS)的总结统计方法的方法。我们的分析集中于来自全球脂质遗传联盟的高密度脂蛋白胆固醇(HDL-C)和甘油三酯(TG)的结果,其报道了94 GW的重要基因座(P≤5×10-8)。从个人级别数据估算特征的相关性。我们的方法鉴定了与Pleiotropic Precistaith的28个基因座,在P≤5×10-8处与HDL-C和TG,这与这些特征中的任何一种没有达到单变量的GW意义。其中十五(53%)呈现拮抗异质性。这些结果表明,我们的方法可以有效地用于分析公布研究的概要统计,以识别新型抗血液枢毛基因座。

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