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Joy of Ping-Pong: Genome-Wide and Phenome-Wide Association Studies

机译:乒乓球的喜悦:基因组和菲尼 - 广泛的协会研究

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Genomic medicine gives hope for patient-specific therapies. Genome-wide association studies (GWASs) elucidate genetic markers that improve understanding of risks and causes for many diseases and may guide therapy on a patient-specific basis. They will take another approach to identify gene-disease associations. “Reverse GWAS” or phenome-wide association studies (PheWASs) determine which phenotypes are associated with a given genotype. The first PheWAS performed in 20101 has provided a systematic approach to analyze many phenotypes potentially associated with a specific genotype and an ability to identify pleiotropy. A recent availability of a large DNA biobank coupled to a de-identified copy of the electronic medical record enable us to integrate genomic data with various phenotypes. Like a ping-pong match, GWASs and PheWASs are complementary, with the ability to replicate and validate others' findings. Denny et al. 2 found that PheWASs replicated 210 of the 751 (28%) single-nucleotide polymorphism (SNP)-phenotype associations from the National Human Genome Research Institute's GWAS catalog, including 66% of those associations that were adequately powered to detect the association. They also identified 63 potentially novel SNP-disease associations, demonstrating pleiotropic effects of the variants.
机译:基因组医学给予患者特异性疗法。基因组 - 宽协会研究(GWASS)阐明遗传标志物,可改善对许多疾病的风险和原因的理解,并可以患者特异性指导治疗。他们将采取另一种方法来鉴定基因疾病协会。 “反向Gwas”或苯甲酸的关联研究(Phewass)确定哪些表型与给定的基因型相关。在20101年进行的第一个PPEWAS提供了一种系统的方法,可以分析许多可能与特定基因型相关的表型表型和鉴定肺炎的能力。最近可用于大型DNA Biobank耦合到电子医疗记录的去识别副本使我们能够将基因组数据与各种表型集成。像平面乒乓球比赛一样,Gwass和Phewass是互补的,能够复制和验证他人的调查结果。 Denny等人。 2发现,来自国家人类基因组研究所的GWAS目录的751(28%)单核苷酸多态性(SNP)的单核苷酸多态性(SNP) - 本型相关联的Phewass 210,包括66%的协会,可充分供电以检测该协会。他们还确定了63个潜在的新型SNP疾病关联,证明了变体的脂肪效应。

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