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Association between DNA damage repair gene somatic mutations and immune‐related gene expression in ovarian cancer

机译:DNA损伤修复基因在卵巢癌中的DNA损伤修复基因躯体突变和免疫相关基因表达的关系

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Background Defects in DNA damage repair (DDR) system may lead to genomic instability and manifest as increased immunogenicity. DDR deficiency is prevalent in ovarian cancer (OvCa); however, the association of DDR mutation with immune profiles in OvCa remains largely unknown. This knowledge will provide an essential basis to the rational design of biomarker‐guided immune combination therapy of OvCa in the future. Methods Whole‐exome sequencing data of 587 OvCa from The Cancer Genome Atlas (TCGA) were used to determine the expression profiles of 47 immune‐related genes and the abundance of tumor‐infiltrating immune cells. A Chinese OvCa cohort (n?=?220) tested by next‐generation sequencing (NGS) was used to validate the association between DDR status and tumor mutation burden (TMB). Results A total of 19.3% in TCGA cohort and 25.9% in Chinese cohort harbored at least one DDR somatic mutation. DDR deficiency exhibited a distinct immune profile with significant higher expression levels of PTPRCAP, CCL5, IFI16, LAG3, IL15RA, and GBP1 in OvCa in the TCGA cohort. Different DDR pathway deficiency displayed various immune profiles. Increased levels of Th1 cells, TMB, and neoantigen were also observed in DDR‐deficient tumors. Conclusions DDR deficiency was associated with specific immune signatures in OvCa. Our findings emphasize the urgent need for biomarker‐guided rational immune combination therapy to maximize the OvCa patients who could benefit from immunotherapy.
机译:背景技术DNA损伤修复(DDR)系统中的缺陷可能导致基因组不稳定性,并表现为增加的免疫原性。 DDR缺乏在卵巢癌(OVCA)中普遍存在;然而,DDR突变与OVCA中免疫分布的关联仍然很大程度上是未知的。本知识将在未来为ovca的生物标引导免疫组合治疗的理性设计提供必要的基础。方法使用来自癌症基因组Atlas(TCGA)的587个OVCA的全外exome测序数据用于确定47个免疫相关基因的表达谱和肿瘤浸润免疫细胞的丰度。通过下一代测序(NGS)测试的中国OVCA队列(N?= 220)用于验证DDR状态和肿瘤突变负担(TMB)之间的关联。结果TCGA队列共计19.3%,25.9%的中文队列覆盖了至少一个DDR躯体突变。 DDR缺陷表现出明显的免疫曲线,具有显着更高的PTPRCAP,CCL5,IFI16,LAG3,IL15RA和TCCA中的GBP1在TCGA队列中的GBP1。不同的DDR途径缺乏显示各种免疫概况。在DDR缺陷型肿瘤中也观察到Th1细胞,TMB和新宿人的水平增加。结论DDR缺乏与OVCA的特异性免疫签名有关。我们的调查结果强调了迫切需要生物标引导的理性免疫联合治疗,以最大限度地提高可从免疫疗法中受益的ovca患者。

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