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Simulation of pooled-sample analysis strategies for COVID-19 mass testing

机译:Covid-19大规模测试汇集样本分析策略的仿真

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Objective To evaluate two pooled-sample analysis strategies (a routine high-throughput approach and a novel context-sensitive approach) for mass testing during the coronavirus disease 2019 (COVID-19) pandemic, with an emphasis on the number of tests required to screen a population. Methods We used Monte Carlo simulations to compare the two testing strategies for different infection prevalences and pooled group sizes. With the routine high-throughput approach, heterogeneous sample pools are formed randomly for polymerase chain reaction (PCR) analysis. With the novel context-sensitive approach, PCR analysis is performed on pooled samples from homogeneous groups of similar people that have been purposively formed in the field. In both approaches, all samples contributing to pools that tested positive are subsequently analysed individually. Findings Both pooled-sample strategies would save substantial resources compared to individual analysis during surge testing and enhanced epidemic surveillance. The context-sensitive approach offers the greatest savings: for instance, 58–89% fewer tests would be required for a pooled group size of 3 to 25 samples in a population of 150?000 with an infection prevalence of 1% or 5%. Correspondingly, the routine high-throughput strategy would require 24–80% fewer tests than individual testing. Conclusion Pooled-sample PCR screening could save resources during COVID-19 mass testing. In particular, the novel context-sensitive approach, which uses pooled samples from homogeneous population groups, could substantially reduce the number of tests required to screen a population. Pooled-sample approaches could help countries sustain population screening over extended periods of time and thereby help contain foreseeable second-wave outbreaks.
机译:目的探讨两种汇集样本分析策略(常规高通量方法和新型语境敏感方法和新型语境敏感方法)在冠状病毒疾病(Covid-19)大流行期间进行大规模测试,重点是筛选所需的测试数量人口。方法采用Monte Carlo模拟来比较不同感染普遍性和汇集组尺寸的两种测试策略。随着常规的高通量方法,非均相样品池随机形成用于聚合酶链式反应(PCR)分析。利用新型的上下文敏感方法,对来自在该领域有用物的均匀组的均匀组进行PCR分析。在这两种方法中,随后单独分析测试阳性的池的所有样品。调查结果融合 - 样本策略将节省大量资源,与浪涌测试期间的个体分析和增强的流行监测。上下文敏感方法提供最大的节省:例如,在150 000人群中,汇集组大小为3至25个样品的汇集组大小需要58-89%,感染患病率为1%或5%。相应地,常规高吞吐量策略需要比单个测试更少24-80%。结论汇集样品PCR筛选可以节省Covid-19大规模测试期间的资源。特别地,使用来自均质群体组的汇集样品的新型上下文敏感方法可以大大减少筛选群体所需的测试数量。汇集样品方法可以帮助各国在延长的时间内维持人口筛查,从而有助于可预见的第二波爆发。

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