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首页> 外文期刊>Bone Reports >Transcriptome analysis reveals potential biomarkers of CLCN7-dependent Autosomal Dominant Osteopetrosis Type 2 (ADO2)
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Transcriptome analysis reveals potential biomarkers of CLCN7-dependent Autosomal Dominant Osteopetrosis Type 2 (ADO2)

机译:转录组分析揭示了 clcn7 - 依赖性常染色体显性骨质异步症2型(ADO2)的潜在生物标志物

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摘要

ADO2 is a rare genetic disease characterized by dense yet fragile bones. To date, the radiological approach remains the gold standard for ADO2 diagnosis. However, recent observations unveiled that ADO2 is a systemic disease affecting various organs beyond bone, including lung, kidney, muscle and brain. Monitoring disease status and progression would greatly benefit from specific biomarkers shared by the affected organs.Inthiswork,dataderivedfromRNAdeepsequencing(RNA-dSeq) ofbone,lung,kidney,muscle,brainandosteoclastsisolatedfromwildtype and Clcn7 G213R ADO2 mice was subjected to Gene Ontology analyses, which identified shared modulated biological processes, molecular functions and cellular components, with Response to stimulus (p=4.26E-19), Cell communication (p=7.41E-17) and Extracellular space (p=3.34E-41) overrepresented in all ADO2 organs tested and in osteoclasts, and RNA processing (p=1.14E-06), Nucleic acid binding (p=3.70E-05) and Microtubule cytoskeleton (p=7.11E-04) underrepresented. KEGG pathway analysis also revealed the presence of common pathways altered in ADO2 organs and in osteoclasts, including Cytokine-cytokine receptor interaction (p=6.72E-06), Hematopoietic cell lineage (p=3.04E-05), JAK-STAT signaling pathway (p= 0.004), Chemokine signaling pathway (p=0.04), Protein processing in endoplasmic reticulum (p=0.006) and Ubiquitin mediated proteolysis (p=0.01). A deep analysis of the altered pathways allowed us to extrapolatealistofgenesmodulatedinallADO2organs,includingEpor, Ccl8 and Cd38 (pb 0.05), encoding the erythropoietin receptor, the monocyte chemoattractant protein 2 and the cyclic ADP ribose hydrolase, respectively. These genes were modulated also in circulating ADO2 monocytes (pb 0.05), thus representing potential candidate biomarkers of the disease. Given that monocytes give rise to osteoclasts and macrophages and that these two cell types are involved in ADO2 pathogenesis in bone and in visceral organs, respectively, we conclude that these transcriptional biomarkers could represent useful and inexpensive tools for ADO2 diagnosis and monitoring of disease status.
机译:ADO2是一种罕见的遗传症,其特征在于密集又脆弱的骨骼。迄今为止,放射性方法仍然是ADO2诊断的金标准。然而,最近的观察结果揭开了ADO2是一种系统疾病,影响骨骼超过骨的各种器官,包括肺,肾,肌肉和脑。监测疾病状况和进展将极大地受益于受影响的机构共享的特定生物标志物。在受影响的原因,肺癌,肾脏,肌肉,颅骨,肾脏,肌肉,颅骨型和CLCN7 G213R ADO2小鼠进行基因本体分析,鉴定分享调制的基因本体分析响应于刺激(p = 4.26e-19),细胞通信(p = 7.41e-17)和细胞外空间(p = 3.34e-41)在所有ADO2器官中持久化的细胞通信(p = 3.34e-41),在骨核苷酸和RNA处理(P = 1.14E-06)中,核酸结合(P = 3.70e-05)和微管细胞骨架(P = 7.11e-04)强的蛋白质。 Kegg途径分析还揭示了在ADO2器官和疏口细胞内部改变的常见途径的存在,包括细胞因子 - 细胞因子受体相互作用(P = 6.72E-06),造血细胞谱系(P = 3.04E-05),JAK-STAT信号通路(P = 0.004),趋化因子信号通路(P = 0.04),内质网的蛋白质加工(P = 0.006)和泛素介导的蛋白水解(P = 0.01)。对改变的途径的深度分析使我们允许我们进入ExtapolateAlisofgenesmodulatedinallado2重组,包括eYthropoietin受体,单核细胞化学蛋白2和环状ADP核糖水解酶的CCL8和CD38(PB 0.05)。这些基因也被调节在循环ADO2单核细胞(PB 0.05)中,从而代表疾病的潜在候选生物标志物。由于单核细胞产生破骨细胞和巨噬细胞,这两种细胞类型参与骨ADO2发病机理和内脏器官,分别,我们得出的结论是,这些转录生物标记物可以代表ADO2诊断和监测的疾病状态的有用和廉价的工具。

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