...
首页> 外文期刊>Journal of Pathology Informatics >Automated computational detection, quantitation, and mapping of mitosis in whole-slide images for clinically actionable surgical pathology decision support
【24h】

Automated computational detection, quantitation, and mapping of mitosis in whole-slide images for clinically actionable surgical pathology decision support

机译:用于临床可行的外科病理学决策支持的全幻灯片中的自动计算检测,定量和丝分裂的映射

获取原文

摘要

Background: Determining mitotic index by counting mitotic figures (MFs) microscopically from tumor areas with most abundant MF (hotspots [HS]) produces a prognostically useful tumor grading biomarker. However, interobserver concordance identifying MF and HS can be poorly reproducible. Immunolabeling MF, coupled with computer-automated counting by image analysis, can improve reproducibility. A computational system for obtaining MF values across digitized whole-slide images (WSIs) was sought that would minimize impact of artifacts, generate values clinically relatable to counting ten high-power microscopic fields of view typical in conventional microscopy, and that would reproducibly map HS topography. Materials and Methods: Relatively low-resolution WSI scans (0.50 μm/pixel) were imported in grid-tile format for feature-based MF segmentation, from naturally occurring canine melanomas providing a wide range of proliferative activity. MF feature extraction conformed to anti-phospho-histone H3-immunolabeled mitotic (M) phase cells. Computer vision image processing was established to subtract key artifacts, obtain MF counts, and employ rotationally invariant feature extraction to map MF topography. Results: The automated topometric HS (TMHS) algorithm identified mitotic HS and mapped select tissue tiles with greatest MF counts back onto WSI thumbnail images to plot HS topographically. Influence of dye, pigment, and extraneous structure artifacts was minimized. TMHS diagnostic decision support included image overlay graphics of HS topography, as well as a spreadsheet and plot of tile-based MF count values. TMHS performance was validated examining both mitotic HS counting and mapping functions. Significantly correlated TMHS MF mapping and metrics were demonstrated using repeat analysis with WSI in different orientation ( R sup2/sup = 0.9916) and by agreement with a pathologist ( R sup2/sup = 0.8605) as well as through assessment of counting function using an independently tuned object counting algorithm (OCA) ( R sup2/sup = 0.9482). Limits of agreement analysis support method interchangeability. MF counts obtained led to accurate patient survival prediction in all ( n = 30) except one case. By contrast, more variable performance was documented when several pathologists examined similar cases using microscopy (pair-wise correlations, rho range = 0.7597–0.9286). Conclusions: Automated TMHS MF segmentation and feature engineering performance were interchangeable with both observer and OCA in digital mode. Moreover, enhanced HS location accuracy and superior method reproducibility were achieved using the automated TMHS algorithm compared to the current practice employing clinical microscopy.
机译:背景:通过从具有大多数MF的肿瘤区域进行微观的膜状体(MFS)测定有丝分裂指数(MFS)(热点[HS])产生预后有用的肿瘤分级生物标志物。然而,识别MF和HS的Interobserver协调可以是不可否认的。免疫标签MF通过图像分析与计算机自动计数相结合,可以提高再现性。寻求用于获得数字化全幻灯片(WSIS)的MF值的计算系统,这将最大限度地减少伪影的影响,在常规显微镜中典型的典型典型的十个高功率微观视野进行临床相关的值,并且这将可重复地映射HS地形。材料和方法:以基于特征的MF分段的网格平铺格式导入相对低分辨率的WSI扫描(0.50μm/像素),从天然存在的犬甘醇细菌瘤提供广泛的增殖活动。 MF特征提取符合抗磷酸组蛋白H3-免疫标记有丝分裂(M)相细胞。建立计算机视觉图像处理以减去密钥伪像,获取MF计数,并采用旋转不变的特征提取来映射MF地形。结果:自动越床尺寸HS(TMHS)算法识别有丝分钟的HS和映射选择组织瓦片,最大的MF计数回到WSI缩略图图像以拓扑地绘制HS。染料,颜料和外来结构伪影的影响最小化。 TMHS诊断决策支持包括HS地形的图像覆盖图形,以及基于图块的MF计数值的电子表格和图。验证了TMHS性能检查了有多种分子HS计数和映射功能。使用WSI以不同的取向(R 2 = 0.9916)的重复分析和与病理学家(R 2 = 0.8605)的协议进行了显着相关的TMHS MF映射和度量。通过使用独立调谐的对象计数算法(OCA)(R 2 = 0.9482)来评估计数函数的评估。协议分析的限制支持方法互换性。除了一个外壳之外,获得的MF计数导致所有(n = 30)的准确患者存活预测。相比之下,当多个病理学家使用显微镜检查类似案例时,记录了更多可变性能(对相关性,RHO范围= 0.7597-0.9286)。结论:自动化TMHS MF分割和特征工程性能与数字模式中的观察者和OCA互换。此外,与采用临床显微镜的当前实践相比,使用自动化TMHS算法实现了增强的HS定位精度和优异的方法再现性。

相似文献

  • 外文文献
  • 中文文献
  • 专利
获取原文

客服邮箱:kefu@zhangqiaokeyan.com

京公网安备:11010802029741号 ICP备案号:京ICP备15016152号-6 六维联合信息科技 (北京) 有限公司©版权所有
  • 客服微信

  • 服务号