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The pH-dependence of second-order rate constants of enzyme modification may provide free-reactant pKa values

机译:酶修饰的二级速率常数的pH依赖性可提供游离反应的pKa值

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摘要

p1. Reactions of enzymes with site-specific reagents may involve intermediate adsorptive complexes formed by parallel reactions in several protonic states. Accordingly, a profile of the apparent second-order rate constant for the modification reaction (Kobs., the observed rate constant under conditions where the reagent concentration is low enough for the reaction to be first-order in reagent) against pH can, in general, reflect free-reactant-state molecular pKa values only if a quasi-equilibrium condition exists around the reactive protonic state (EHR) of the adsorptive complex. 2. Usually the condition for quasi-equilibrium is expressed in terms of the rate constants around EHR: (formula: see text) i.e. k mod. less than k-2. This often cannot be assessed directly, particularly if it is not possible to determine kmod. 3. It is shown that kmod. must be much less than k-2, however, if kobs. (the pH-independent value of kobs.) less than k+2. 4. Since probable values of k+2 greater than 10(6)M-1.S-1 and since values of kobs. for many modification reactions less than 10(6)M-1.S-1, the equilibrium assumption should be valid, and kinetic study of such reactions should provide reactant-state pKa values. 5. This may not apply to catalyses, because for them the value of kcat./Km may exceed 5 X 10(5)M-1.S-1. 6. The conditions under which the formation of an intermediate complex by parallel pathways may come to quasi-equilibrium are discussed in the Appendix./p
机译:> 1。酶与位点特异性试剂的反应可能涉及在几种质子状态下通过平行反应形成的中间吸附复合物。因此,一般而言,修饰反应的表观二阶速率常数(Kobs,在试剂浓度足够低以至于反应在试剂中成为一级反应的条件下观察到的速率常数)相对于pH的分布图仅在吸附复合物的反应性质子态(EHR)周围存在准平衡条件时,才反映自由反应态分子的pKa值。 2.准平衡的条件通常用围绕EHR的速率常数表示:(公式:见正文),即k mod。小于k-2。这通常无法直接进行评估,尤其是在无法确定公里数的情况下。 3.显示公里数。必须小于k-2,但是如果是小刀。 (kobs的pH无关值)小于k + 2。 4.因为k + 2的可能值大于10(6)M-1.S-1,并且因为kobs的值。对于许多小于10(6)M-1.S-1的修饰反应,平衡假设应是正确的,并且对此类反应的动力学研究应提供反应物态pKa值。 5.这可能不适用于催化剂,因为kcat./Km的值可能超过5 X 10(5)M-1.S-1。 6.在附录中讨论了通过平行途径形成中间配合物可能达到准平衡的条件。

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