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Development of a Configurable Growth Chamber with a Computer Vision System to Study Circadian Rhythm in Plants

机译:开发具有计算机视觉系统的可配置生长箱以研究植物的昼夜节律

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Plant development is the result of an endogenous morphogenetic program that integrates environmental signals. The so-called circadian clock is a set of genes that integrates environmental inputs into an internal pacing system that gates growth and other outputs. Study of circadian growth responses requires high sampling rates to detect changes in growth and avoid aliasing. We have developed a flexible configurable growth chamber comprising a computer vision system that allows sampling rates ranging between one image per 30 s to hours/days. The vision system has a controlled illumination system, which allows the user to set up different configurations. The illumination system used emits a combination of wavelengths ensuring the optimal growth of species under analysis. In order to obtain high contrast of captured images, the capture system is composed of two CCD cameras, for day and night periods. Depending on the sample type, a flexible image processing software calculates different parameters based on geometric calculations. As a proof of concept we tested the system in three different plant tissues, growth of petunia- and snapdragon (Antirrhinum majus) flowers and of cladodes from the cactus Opuntia ficus-indica. We found that petunia flowers grow at a steady pace and display a strong growth increase in the early morning, whereas Opuntia cladode growth turned out not to follow a circadian growth pattern under the growth conditions imposed. Furthermore we were able to identify a decoupling of increase in area and length indicating that two independent growth processes are responsible for the final size and shape of the cladode.
机译:植物发育是整合环境信号的内生形态发生程序的结果。所谓的昼夜节律时钟是一组将环境输入整合到控制生长和其他输出的内部起搏系统中的基因。对昼夜节律生长反应的研究需要较高的采样率,以检测生长的变化并避免混叠。我们已经开发了一种灵活的可配置生长室,该生长室包括一个计算机视觉系统,该系统允许的采样率范围为每30秒一张图像到小时/天。视觉系统具有受控的照明系统,该系统允许用户设置不同的配置。所使用的照明系统发出的波长组合确保了所分析物种的最佳生长。为了获得所捕获图像的高对比度,该捕获系统由两个CCD摄像机组成,用于白天和黑夜。根据样品类型,灵活的图像处理软件会根据几何计算来计算不同的参数。作为概念验证,我们在三种不同的植物组织中测试了该系统,这些植物分别是矮牵牛和金鱼草的花朵以及仙人掌仙人掌仙人掌的枝条生长。我们发现矮牵牛花卉以稳定的速度增长,并在清晨呈现出强劲的增长,而在所规定的生长条件下,仙人掌的枝条生长却没有遵循昼夜节律的增长模式。此外,我们能够确定面积和长度的增加之间存在脱钩关系,这表明两个独立的生长过程是导致金属环最终尺寸和形状的原因。

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