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Predicting Hotspots for Influenza Virus Reassortment

机译:预测流感病毒重排的热点

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The 1957 and 1968 influenza pandemics, each of which killed ≈1 million persons, arose through reassortment events. Influenza virus in humans and domestic animals could reassort and cause another pandemic. To identify geographic areas where agricultural production systems are conducive to reassortment, we fitted multivariate regression models to surveillance data on influenza A virus subtype H5N1 among poultry in China and Egypt and subtype H3N2 among humans. We then applied the models across Asia and Egypt to predict where subtype H3N2 from humans and subtype H5N1 from birds overlap; this overlap serves as a proxy for co-infection and in vivo reassortment. For Asia, we refined the prioritization by identifying areas that also have high swine density. Potential geographic foci of reassortment include the northern plains of India, coastal and central provinces of China, the western Korean Peninsula and southwestern Japan in Asia, and the Nile Delta in Egypt.
机译:1957年和1968年的流感大流行是通过重分类事件而引起的,每个大流行造成约100万人死亡。人类和家畜中的流感病毒可能会重新组合并引起另一种大流行。为了确定有利于农业生产系统重组的地理区域,我们对中国和埃及的家禽中的甲型流感病毒H5N1亚型和人类中的H3N2亚型的监测数据拟合了多元回归模型。然后,我们将模型应用到亚洲和埃及,以预测人类H3N2亚型和鸟类H5N1亚型重叠的位置;这种重叠可作为合并感染和体内重组的代理。对于亚洲,我们通过确定猪密度较高的地区来优化优先顺序。重新分类的潜在地理重点包括印度的北部平原,中国的沿海和中部省份,亚洲的朝鲜半岛西部和日本的西南部以及埃及的尼罗河三角洲。

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