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首页> 外文期刊>BMC Genomics >Transcriptome analysis of the sex pheromone gland of the noctuid moth Heliothis virescens
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Transcriptome analysis of the sex pheromone gland of the noctuid moth Heliothis virescens

机译:夜蛾蛾性信息素的性信息素腺的转录组分析

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Background The chemical components of sex pheromones have been determined for more than a thousand moth species, but so far only a handful of genes encoding enzymes responsible for the biosynthesis of these compounds have been identified. For understanding the evolution of moth sexual communication, it is essential to know which genes are involved in the production of specific pheromone components and what controls the variation in their relative frequencies in the pheromone blend. We used a transcriptomic approach to characterize the pheromone gland of the Noctuid moth Heliothis virescens, an important agricultural pest, in order to obtain substantial general sequence information and to identify a range of candidate genes involved in the pheromone biosynthetic pathway. Results To facilitate identifying sets of genes involved in a broad range of processes and to capture rare transcripts, we developed our majority of ESTs from a normalized cDNA library of Heliothis virescens pheromone glands (PG). Combining these with a non-normalized library yielded a total of 17,233 ESTs, which assembled into 2,082 contigs and 6,228 singletons. Using BLAST searches of the NR and Swissprot databases we were able to identify a large number of putative unique gene elements (unigenes), which we compared to those derived from previous transcriptomic surveys of the larval stage of Heliothis virescens. The distribution of unigenes among GO Biological Process functional groups shows an overall similarity between PG and larval transcriptomes, but with distinct enrichment of specific pathways in the PG. In addition, we identified a large number of candidate genes in the pheromone biosynthetic pathways. Conclusion These data constitute one of the first large-scale EST-projects for Noctuidae, a much-needed resource for exploring these pest species. Our analysis shows a surprisingly complex transcriptome and we identified a large number of potential pheromone biosynthetic pathway and immune-related genes that can be applied to population and systematic studies of Heliothis virescens and other Noctuidae.
机译:背景技术已经确定了超过一千个蛾类的性信息素的化学成分,但到目前为止,仅鉴定了少数编码负责这些化合物生物合成的酶的基因。为了了解蛾类性交的进化,了解特定信息素成分的产生涉及哪些基因,以及哪些信息素在信息素混合物中控制了其相对频率的变化,这一点至关重要。我们使用转录组学方法来表征夜蛾蛾Heliothis virescens(一种重要的农业害虫)的信息素腺,以获得大量的一般序列信息,并鉴定参与信息素生物合成途径的一系列候选基因。结果为了促进鉴定涉及广泛过程的基因组并捕获稀有的转录本,我们从Heliothis virescens信息素腺(PG)的标准化cDNA文库中开发了大多数EST。将它们与非规范化文库结合在一起,总共产生了17233个EST,将其分为2082个重叠群和6228个单例。使用NR和Swissprot数据库的BLAST搜索,我们能够鉴定出大量推定的独特基因元件(单基因),并将其与先前从葵花虫的幼虫阶段的转录组学调查中获得的那些进行了比较。 GO生物过程功能组之间的单基因分布显示PG和幼虫转录组之间总体相似,但PG中特定途径的富集程度明显。另外,我们在信息素生物合成途径中鉴定了大量候选基因。结论这些数据构成了夜蛾科最早的大型EST项目之一,这是探索这些害虫物种的急需资源。我们的分析显示了一个令人惊讶的复杂转录组,并且我们鉴定了许多潜在的信息素生物合成途径和免疫相关基因,可将其用于拟南芥和其他夜蛾科的种群和系统研究。

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