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The LAILAPS Search Engine: Relevance Ranking in Life Science Databases

机译:LAILAPS搜索引擎:生命科学数据库中的相关性排名

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Search engines and retrieval systems are popular tools at a life science desktop. The manual inspection of hundreds of database entries, that reflect a life science concept or fact, is a time intensive daily work. Hereby, not the number of query results matters, but the relevance does. In this paper, we present the LAILAPS search engine for life science databases. The concept is to combine a novel feature model for relevance ranking, a machine learning approach to model user relevance profiles, ranking improvement by user feedback tracking and an intuitive and slim web user interface, that estimates relevance rank by tracking user interactions. Queries are formulated as simple keyword lists and will be expanded by synonyms. Supporting a flexible text index and a simple data import format, LAILAPS can easily be used both as search engine for comprehensive integrated life science databases and for small in-house project databases. With a set of features, extracted from each database hit in combination with user relevance preferences, a neural network predicts user specific relevance scores. Using expert knowledge as training data for a predefined neural network or using users own relevance training sets, a reliable relevance ranking of database hits has been implemented. In this paper, we present the LAILAPS system, the concepts, benchmarks and use cases. LAILAPS is public available for SWISSPROT data at http://lailaps.ipk-gatersleben.de.
机译:搜索引擎和检索系统是生命科学桌面上流行的工具。手动检查数百个反映生命科学概念或事实的数据库条目是一项耗时的日常工作。因此,无关紧要的是查询结果的数量,而是相关性。在本文中,我们介绍了用于生命科学数据库的LAILAPS搜索引擎。其概念是将新颖的特征模型用于关联性排名,将用户关联性模型建模的机器学习方法,通过用户反馈跟踪进行的排名改进以及直观且苗条的Web用户界面(通过跟踪用户互动来估算关联性排名)相结合。查询被表述为简单的关键字列表,并将通过同义词进行扩展。 LAILAPS支持灵活的文本索引和简单的数据导入格式,可以轻松地用作全面集成生命科学数据库和小型内部项目数据库的搜索引擎。通过从每个数据库匹配中提取的一组功能以及用户相关性偏好设置,神经网络可以预测用户特定的相关性得分。使用专家知识作为预定义神经网络的训练数据或使用用户自己的相关性训练集,已经实现了数据库点击的可靠相关性排名。在本文中,我们介绍了LAILAPS系统,概念,基准和用例。 LAILAPS可通过http://lailaps.ipk-gatersleben.de公开获取SWISSPROT数据。

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